Variant report

Variant	rs73342783
Chromosome Location	chr6:2353434-2353435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:2119577..2122402-chr6:2352666..2355381,2	MCF-7	breast:
2	chr6:2351761..2353493-chr6:2362781..2364796,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11967121	1.00[AMR][1000 genomes]
rs11968518	1.00[AMR][1000 genomes]
rs1872597	1.00[AMR][1000 genomes]
rs73340799	1.00[AMR][1000 genomes]
rs73340801	1.00[AMR][1000 genomes]
rs73344705	1.00[AMR][1000 genomes]
rs73420770	1.00[AMR][1000 genomes]
rs73420780	1.00[AMR][1000 genomes]
rs9328085	1.00[AMR][1000 genomes]
rs9501825	1.00[AMR][1000 genomes]
rs9501829	1.00[AMR][1000 genomes]
rs9503122	1.00[AMR][1000 genomes]
rs9503124	1.00[AMR][1000 genomes]
rs9503128	1.00[AMR][1000 genomes]
rs9503131	1.00[AMR][1000 genomes]
rs9503138	1.00[AMR][1000 genomes]
rs9503139	1.00[AMR][1000 genomes]
rs9503143	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9503144	1.00[AMR][1000 genomes]
rs9503145	1.00[AMR][1000 genomes]
rs9885669	1.00[AMR][1000 genomes]
rs9885981	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
2	nsv883388	chr6:2093432-2514911	Strong transcription Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
3	nsv883389	chr6:2093432-2776303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
4	nsv1021573	chr6:2246721-2832408	Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
5	nsv538102	chr6:2246721-2832408	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
6	nsv883390	chr6:2265344-2584919	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv883391	chr6:2282747-2507448	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2339200-2370000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:2344400-2353600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:2344400-2377400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:2345400-2365800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:2345600-2353800	Weak transcription	Fetal Stomach	stomach
6	chr6:2346600-2353800	Weak transcription	HepG2	liver
7	chr6:2347000-2362800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:2349400-2362000	Weak transcription	Spleen	Spleen
9	chr6:2349600-2353800	Weak transcription	Stomach Mucosa	stomach
10	chr6:2350000-2356600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:2350600-2353800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:2351000-2353800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:2351800-2354400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:2352000-2353800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:2352000-2362400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:2352400-2353800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:2352400-2353800	Weak transcription	NHLF	lung
18	chr6:2352400-2355800	Enhancers	Osteobl	bone
19	chr6:2352400-2376400	Weak transcription	HSMMtube	muscle
20	chr6:2352600-2353600	Weak transcription	Fetal Lung	lung
21	chr6:2352600-2353800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:2352800-2353800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:2352800-2353800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:2352800-2353800	Weak transcription	Aorta	Aorta
25	chr6:2352800-2354000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:2352800-2356400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:2352800-2360200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:2353000-2354000	Weak transcription	HSMM	muscle
29	chr6:2353200-2353600	Weak transcription	NHDF-Ad	bronchial
30	chr6:2353400-2353800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:2353400-2353800	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links