Variant report

Variant	rs73342912
Chromosome Location	chr5:126524094-126524095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs56676434	1.00[AMR][1000 genomes]
rs56765813	1.00[AMR][1000 genomes]
rs59296009	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60564596	1.00[AMR][1000 genomes]
rs6868192	0.83[AMR][1000 genomes]
rs6868511	0.83[AMR][1000 genomes]
rs6868955	0.83[AMR][1000 genomes]
rs73337280	0.83[AMR][1000 genomes]
rs73337285	0.83[AMR][1000 genomes]
rs73337289	0.83[AMR][1000 genomes]
rs73337292	0.83[AMR][1000 genomes]
rs73337293	0.83[AMR][1000 genomes]
rs73337295	0.83[AMR][1000 genomes]
rs73339203	0.83[AMR][1000 genomes]
rs73339207	0.83[AMR][1000 genomes]
rs73339210	0.83[AMR][1000 genomes]
rs73339218	0.83[AMR][1000 genomes]
rs73339225	0.83[AMR][1000 genomes]
rs73339241	0.83[AMR][1000 genomes]
rs73339244	0.83[AMR][1000 genomes]
rs73339298	1.00[AMR][1000 genomes]
rs73339301	1.00[AMR][1000 genomes]
rs73341206	1.00[AMR][1000 genomes]
rs73341218	1.00[AMR][1000 genomes]
rs73342910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342931	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342938	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342940	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7709283	0.83[AMR][1000 genomes]
rs7717574	0.83[AMR][1000 genomes]
rs7722202	0.83[AMR][1000 genomes]
rs7722206	0.83[AMR][1000 genomes]
rs7729101	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv521086	chr5:126519351-126525350	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126523600-126524400	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:126523600-126526400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:126523600-126528200	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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