Variant report

Variant	rs56765813
Chromosome Location	chr5:126443907-126443908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs56676434	1.00[AMR][1000 genomes]
rs58148331	0.83[AMR][1000 genomes]
rs58223491	0.83[AMR][1000 genomes]
rs58369492	0.83[AMR][1000 genomes]
rs58412027	0.83[AMR][1000 genomes]
rs59296009	1.00[AMR][1000 genomes]
rs60037929	0.83[AMR][1000 genomes]
rs60564596	1.00[AMR][1000 genomes]
rs61270363	0.83[AMR][1000 genomes]
rs6865595	0.83[AMR][1000 genomes]
rs6868192	0.83[AMR][1000 genomes]
rs6868511	0.83[AMR][1000 genomes]
rs6868955	0.83[AMR][1000 genomes]
rs6880088	0.83[AMR][1000 genomes]
rs6880409	0.83[AMR][1000 genomes]
rs73335454	0.83[AMR][1000 genomes]
rs73335458	0.83[AMR][1000 genomes]
rs73335489	0.83[AMR][1000 genomes]
rs73335496	0.83[AMR][1000 genomes]
rs73337212	0.83[AMR][1000 genomes]
rs73337215	0.83[AMR][1000 genomes]
rs73337227	0.83[AMR][1000 genomes]
rs73337239	0.83[AMR][1000 genomes]
rs73337244	0.83[AMR][1000 genomes]
rs73337246	0.83[AMR][1000 genomes]
rs73337260	0.83[AMR][1000 genomes]
rs73337261	0.83[AMR][1000 genomes]
rs73337269	0.83[AMR][1000 genomes]
rs73337280	0.83[AMR][1000 genomes]
rs73337285	0.83[AMR][1000 genomes]
rs73337289	0.83[AMR][1000 genomes]
rs73337292	0.83[AMR][1000 genomes]
rs73337293	0.83[AMR][1000 genomes]
rs73337295	0.83[AMR][1000 genomes]
rs73339203	0.83[AMR][1000 genomes]
rs73339207	0.83[AMR][1000 genomes]
rs73339210	0.83[AMR][1000 genomes]
rs73339218	0.83[AMR][1000 genomes]
rs73339225	0.83[AMR][1000 genomes]
rs73339241	0.83[AMR][1000 genomes]
rs73339244	0.83[AMR][1000 genomes]
rs73339298	1.00[AMR][1000 genomes]
rs73339301	1.00[AMR][1000 genomes]
rs73341206	1.00[AMR][1000 genomes]
rs73341218	1.00[AMR][1000 genomes]
rs73342910	1.00[AMR][1000 genomes]
rs73342912	1.00[AMR][1000 genomes]
rs73342931	1.00[AMR][1000 genomes]
rs73342938	1.00[AMR][1000 genomes]
rs73342940	1.00[AMR][1000 genomes]
rs7709283	0.83[AMR][1000 genomes]
rs7717574	0.83[AMR][1000 genomes]
rs7722202	0.83[AMR][1000 genomes]
rs7722206	0.83[AMR][1000 genomes]
rs7729101	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1816248	chr5:126399039-126486539	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126433400-126444200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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