Variant report

Variant	rs60037929
Chromosome Location	chr5:126321167-126321168
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:126313681..126317112-chr5:126318689..126323055,6	K562	blood:
2	chr5:126318646..126322262-chr5:126365005..126368351,4	K562	blood:
3	chr5:126305965..126309284-chr5:126320390..126324364,3	K562	blood:
4	chr5:126318646..126324314-chr5:126364325..126368351,7	K562	blood:

Variant related genes	Relation type
ENSG00000173926	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs56676434	0.83[AMR][1000 genomes]
rs56765813	0.83[AMR][1000 genomes]
rs57826420	1.00[AMR][1000 genomes]
rs58148331	1.00[AMR][1000 genomes]
rs58223491	1.00[AMR][1000 genomes]
rs58369492	1.00[AMR][1000 genomes]
rs58412027	1.00[AMR][1000 genomes]
rs60564596	0.83[AMR][1000 genomes]
rs61270363	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61396259	1.00[AMR][1000 genomes]
rs6865595	1.00[AMR][1000 genomes]
rs6868192	1.00[AMR][1000 genomes]
rs6868511	1.00[AMR][1000 genomes]
rs6868955	1.00[AMR][1000 genomes]
rs6880088	1.00[AMR][1000 genomes]
rs6880409	1.00[AMR][1000 genomes]
rs73335436	1.00[AMR][1000 genomes]
rs73335454	1.00[AMR][1000 genomes]
rs73335458	1.00[AMR][1000 genomes]
rs73335489	1.00[AMR][1000 genomes]
rs73335496	1.00[AMR][1000 genomes]
rs73337212	1.00[AMR][1000 genomes]
rs73337215	1.00[AMR][1000 genomes]
rs73337227	1.00[AMR][1000 genomes]
rs73337239	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73337244	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73337246	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73337260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73337261	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73337269	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73337280	1.00[AMR][1000 genomes]
rs73337285	1.00[AMR][1000 genomes]
rs73337289	1.00[AMR][1000 genomes]
rs73337292	1.00[AMR][1000 genomes]
rs73337293	1.00[AMR][1000 genomes]
rs73337295	1.00[AMR][1000 genomes]
rs73339203	1.00[AMR][1000 genomes]
rs73339207	1.00[AMR][1000 genomes]
rs73339210	1.00[AMR][1000 genomes]
rs73339218	1.00[AMR][1000 genomes]
rs73339225	1.00[AMR][1000 genomes]
rs73339241	1.00[AMR][1000 genomes]
rs73339244	1.00[AMR][1000 genomes]
rs73339298	0.83[AMR][1000 genomes]
rs73339301	0.83[AMR][1000 genomes]
rs73341206	0.83[AMR][1000 genomes]
rs73341218	0.83[AMR][1000 genomes]
rs7709283	1.00[AMR][1000 genomes]
rs7716932	1.00[AMR][1000 genomes]
rs7717574	1.00[AMR][1000 genomes]
rs7722202	1.00[AMR][1000 genomes]
rs7722206	1.00[AMR][1000 genomes]
rs7729101	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126308400-126328800	Weak transcription	Gastric	stomach
2	chr5:126309000-126331000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:126309000-126331600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:126309400-126323000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:126309400-126323200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:126309400-126323200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:126309400-126334000	Weak transcription	Small Intestine	intestine
8	chr5:126310000-126323400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:126312600-126323400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:126312800-126322800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:126312800-126331600	Weak transcription	HSMM	muscle
12	chr5:126314400-126323400	Enhancers	Primary B cells from peripheral blood	blood
13	chr5:126316800-126321800	Enhancers	K562	blood
14	chr5:126318600-126322400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:126318800-126323000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr5:126318800-126323800	Weak transcription	HepG2	liver
17	chr5:126319200-126322400	Weak transcription	Adipose Nuclei	Adipose
18	chr5:126319400-126322800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:126320000-126324800	Weak transcription	Spleen	Spleen
20	chr5:126320200-126323200	Weak transcription	Right Atrium	heart
21	chr5:126320200-126324200	Enhancers	Fetal Heart	heart
22	chr5:126320600-126321800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr5:126320600-126323000	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:126320800-126321400	Weak transcription	GM12878-XiMat	blood
25	chr5:126320800-126322600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:126320800-126323000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr5:126320800-126323200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr5:126320800-126323200	Weak transcription	Psoas Muscle	Psoas
29	chr5:126320800-126323400	Weak transcription	Right Ventricle	heart
30	chr5:126320800-126323400	Weak transcription	HUVEC	blood vessel
31	chr5:126320800-126356000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr5:126321000-126321400	Weak transcription	Primary B cells from cord blood	blood
33	chr5:126321000-126321400	Weak transcription	Left Ventricle	heart
34	chr5:126321000-126322400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:126321000-126323000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr5:126321000-126323200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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