Variant report

Variant	rs73335496
Chromosome Location	chr5:126252202-126252203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs56676434	0.83[AMR][1000 genomes]
rs56765813	0.83[AMR][1000 genomes]
rs57826420	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58148331	1.00[AMR][1000 genomes]
rs58223491	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58369492	1.00[AMR][1000 genomes]
rs58412027	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60037929	1.00[AMR][1000 genomes]
rs60564596	0.83[AMR][1000 genomes]
rs61270363	1.00[AMR][1000 genomes]
rs61396259	1.00[AMR][1000 genomes]
rs6865595	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6868192	1.00[AMR][1000 genomes]
rs6868511	1.00[AMR][1000 genomes]
rs6868955	1.00[AMR][1000 genomes]
rs6880088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880409	1.00[AMR][1000 genomes]
rs73335436	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335454	1.00[AMR][1000 genomes]
rs73335458	1.00[AMR][1000 genomes]
rs73335489	1.00[AMR][1000 genomes]
rs73337212	1.00[AMR][1000 genomes]
rs73337215	1.00[AMR][1000 genomes]
rs73337227	1.00[AMR][1000 genomes]
rs73337239	1.00[AMR][1000 genomes]
rs73337244	1.00[AMR][1000 genomes]
rs73337246	1.00[AMR][1000 genomes]
rs73337260	1.00[AMR][1000 genomes]
rs73337261	1.00[AMR][1000 genomes]
rs73337269	1.00[AMR][1000 genomes]
rs73337280	1.00[AMR][1000 genomes]
rs73337285	1.00[AMR][1000 genomes]
rs73337289	1.00[AMR][1000 genomes]
rs73337292	1.00[AMR][1000 genomes]
rs73337293	1.00[AMR][1000 genomes]
rs73337295	1.00[AMR][1000 genomes]
rs73339203	1.00[AMR][1000 genomes]
rs73339207	1.00[AMR][1000 genomes]
rs73339210	1.00[AMR][1000 genomes]
rs73339218	1.00[AMR][1000 genomes]
rs73339225	1.00[AMR][1000 genomes]
rs73339241	1.00[AMR][1000 genomes]
rs73339244	1.00[AMR][1000 genomes]
rs73339298	0.83[AMR][1000 genomes]
rs73339301	0.83[AMR][1000 genomes]
rs73341206	0.83[AMR][1000 genomes]
rs73341218	0.83[AMR][1000 genomes]
rs7709283	1.00[AMR][1000 genomes]
rs7716932	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7717574	1.00[AMR][1000 genomes]
rs7722202	1.00[AMR][1000 genomes]
rs7722206	1.00[AMR][1000 genomes]
rs7729101	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949054	chr5:125918148-126254480	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv534292	chr5:125993451-126259315	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126201800-126253400	Weak transcription	A549	lung
2	chr5:126214800-126255200	Weak transcription	Psoas Muscle	Psoas
3	chr5:126229600-126253600	Weak transcription	Brain Anterior Caudate	brain
4	chr5:126231200-126254000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:126233800-126256000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:126237000-126254000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:126237800-126256000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:126238200-126256000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:126238800-126253800	Weak transcription	HSMMtube	muscle
10	chr5:126244000-126253600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:126244400-126257000	Weak transcription	Fetal Thymus	thymus
12	chr5:126244400-126261200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:126245400-126253000	Strong transcription	Fetal Muscle Trunk	muscle
14	chr5:126245400-126253600	Strong transcription	Primary B cells from cord blood	blood
15	chr5:126245400-126256000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:126245600-126253600	Strong transcription	HSMM	muscle
17	chr5:126245800-126256600	Weak transcription	Thymus	Thymus
18	chr5:126246200-126253200	Weak transcription	Stomach Mucosa	stomach
19	chr5:126246200-126253400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:126246200-126253600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr5:126246200-126255400	Weak transcription	Brain Substantia Nigra	brain
22	chr5:126246200-126256600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:126246200-126259800	Weak transcription	Fetal Kidney	kidney
24	chr5:126246400-126253600	Weak transcription	Colonic Mucosa	Colon
25	chr5:126246400-126256000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr5:126247000-126253600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr5:126247000-126253800	Weak transcription	NHLF	lung
28	chr5:126247000-126255400	Weak transcription	Fetal Brain Female	brain
29	chr5:126247200-126254600	Weak transcription	HepG2	liver
30	chr5:126247400-126253000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr5:126247400-126254000	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr5:126247600-126253000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr5:126247600-126253600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr5:126247600-126256600	Enhancers	Fetal Heart	heart
35	chr5:126247800-126254200	Strong transcription	Primary B cells from peripheral blood	blood
36	chr5:126247800-126257200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr5:126248000-126253800	Strong transcription	K562	blood
38	chr5:126248000-126257000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr5:126248800-126255200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr5:126248800-126256200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr5:126249000-126252800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr5:126249000-126253000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr5:126249000-126253800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:126249000-126253800	Weak transcription	Osteobl	bone
45	chr5:126249000-126256800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr5:126249400-126255400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr5:126249800-126252400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr5:126249800-126253000	Weak transcription	Gastric	stomach
49	chr5:126250000-126253400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr5:126250000-126253600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links