Variant report

Variant	rs6865595
Chromosome Location	chr5:126265833-126265834
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs56676434	0.83[AMR][1000 genomes]
rs56765813	0.83[AMR][1000 genomes]
rs57826420	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58148331	1.00[AMR][1000 genomes]
rs58223491	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58369492	1.00[AMR][1000 genomes]
rs58412027	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60037929	1.00[AMR][1000 genomes]
rs60564596	0.83[AMR][1000 genomes]
rs61270363	1.00[AMR][1000 genomes]
rs61396259	1.00[AMR][1000 genomes]
rs6868192	1.00[AMR][1000 genomes]
rs6868511	1.00[AMR][1000 genomes]
rs6868955	1.00[AMR][1000 genomes]
rs6880088	0.80[ASW][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880409	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs73335436	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335454	1.00[AMR][1000 genomes]
rs73335458	1.00[AMR][1000 genomes]
rs73335489	1.00[AMR][1000 genomes]
rs73335496	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73337212	1.00[AMR][1000 genomes]
rs73337215	1.00[AMR][1000 genomes]
rs73337227	1.00[AMR][1000 genomes]
rs73337239	1.00[AMR][1000 genomes]
rs73337244	1.00[AMR][1000 genomes]
rs73337246	1.00[AMR][1000 genomes]
rs73337260	1.00[AMR][1000 genomes]
rs73337261	1.00[AMR][1000 genomes]
rs73337269	1.00[AMR][1000 genomes]
rs73337280	1.00[AMR][1000 genomes]
rs73337285	1.00[AMR][1000 genomes]
rs73337289	1.00[AMR][1000 genomes]
rs73337292	1.00[AMR][1000 genomes]
rs73337293	1.00[AMR][1000 genomes]
rs73337295	1.00[AMR][1000 genomes]
rs73339203	1.00[AMR][1000 genomes]
rs73339207	1.00[AMR][1000 genomes]
rs73339210	1.00[AMR][1000 genomes]
rs73339218	1.00[AMR][1000 genomes]
rs73339225	1.00[AMR][1000 genomes]
rs73339241	1.00[AMR][1000 genomes]
rs73339244	1.00[AMR][1000 genomes]
rs73339298	0.83[AMR][1000 genomes]
rs73339301	0.83[AMR][1000 genomes]
rs73341206	0.83[AMR][1000 genomes]
rs73341218	0.83[AMR][1000 genomes]
rs7709283	1.00[AMR][1000 genomes]
rs7716932	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7717574	1.00[AMR][1000 genomes]
rs7722202	1.00[AMR][1000 genomes]
rs7722206	1.00[AMR][1000 genomes]
rs7729101	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126253600-126300400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:126254000-126277800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:126254000-126278800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:126255400-126272400	Weak transcription	HSMM	muscle
5	chr5:126255600-126272400	Weak transcription	HSMMtube	muscle
6	chr5:126257200-126267800	Weak transcription	Psoas Muscle	Psoas
7	chr5:126257800-126267800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:126257800-126274000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:126258000-126266600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:126258000-126266600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:126258000-126274800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:126258200-126266600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:126261800-126266200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:126261800-126266400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:126262000-126274200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:126262200-126266600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:126262200-126266800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:126262400-126266600	Weak transcription	Brain Germinal Matrix	brain
19	chr5:126262400-126267800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr5:126262400-126277600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:126263200-126280800	Weak transcription	K562	blood
22	chr5:126263400-126266800	Weak transcription	Brain Substantia Nigra	brain
23	chr5:126263400-126267800	Weak transcription	Left Ventricle	heart
24	chr5:126263400-126268200	Weak transcription	Right Atrium	heart
25	chr5:126264000-126267800	Weak transcription	Right Ventricle	heart
26	chr5:126264200-126266000	Weak transcription	Fetal Heart	heart
27	chr5:126264200-126266600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:126264600-126283000	Weak transcription	Primary T cells from cord blood	blood

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