Variant report

Variant	rs73342940
Chromosome Location	chr5:126545577-126545578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs56676434	1.00[AMR][1000 genomes]
rs56765813	1.00[AMR][1000 genomes]
rs59296009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60564596	1.00[AMR][1000 genomes]
rs6868192	0.83[AMR][1000 genomes]
rs6868511	0.83[AMR][1000 genomes]
rs6868955	0.83[AMR][1000 genomes]
rs73339218	0.83[AMR][1000 genomes]
rs73339225	0.83[AMR][1000 genomes]
rs73339241	0.83[AMR][1000 genomes]
rs73339244	0.83[AMR][1000 genomes]
rs73339298	1.00[AMR][1000 genomes]
rs73339301	1.00[AMR][1000 genomes]
rs73341206	1.00[AMR][1000 genomes]
rs73341218	1.00[AMR][1000 genomes]
rs73342910	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342912	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342931	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342938	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7709283	0.83[AMR][1000 genomes]
rs7722202	0.83[AMR][1000 genomes]
rs7722206	0.83[AMR][1000 genomes]
rs7729101	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126542600-126545600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:126542800-126545600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:126544200-126545800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:126544600-126546400	Enhancers	Brain Substantia Nigra	brain
5	chr5:126545200-126545800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:126545200-126546000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr5:126545200-126546600	Enhancers	Brain Germinal Matrix	brain
8	chr5:126545400-126547200	Enhancers	Brain Hippocampus Middle	brain
9	chr5:126545400-126548200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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