Variant report
| Variant | rs73355863 |
|---|---|
| Chromosome Location | chr6:11501158-11501159 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:5001504..5004136-chr6:11500081..11502077,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000124787 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1150571 | 1.00[AMR][1000 genomes] |
| rs73355855 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73355857 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73357809 | 1.00[AMR][1000 genomes] |
| rs73357817 | 1.00[AMR][1000 genomes] |
| rs73357819 | 1.00[AMR][1000 genomes] |
| rs9461772 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9461788 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9461837 | 1.00[AMR][1000 genomes] |
| rs9461948 | 1.00[AMR][1000 genomes] |
| rs9469100 | 1.00[AMR][1000 genomes] |
| rs9469269 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9469270 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9469271 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9469320 | 1.00[AMR][1000 genomes] |
| rs9469350 | 1.00[AMR][1000 genomes] |
| rs9469352 | 1.00[AMR][1000 genomes] |
| rs9469587 | 1.00[AMR][1000 genomes] |
| rs9469630 | 1.00[AMR][1000 genomes] |
| rs9469674 | 1.00[AMR][1000 genomes] |
| rs9469768 | 1.00[AMR][1000 genomes] |
| rs9986328 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021078 | chr6:10819083-11558560 | Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
| 2 | nsv538135 | chr6:10819083-11558560 | Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
| 3 | nsv432848 | chr6:11371614-11560114 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:11501000-11502800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
