Variant report

Variant	rs73357817
Chromosome Location	chr6:11532739-11532740
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1150571	1.00[AMR][1000 genomes]
rs73355855	1.00[AMR][1000 genomes]
rs73355857	1.00[AMR][1000 genomes]
rs73355863	1.00[AMR][1000 genomes]
rs73357809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9461772	1.00[AMR][1000 genomes]
rs9461788	1.00[AMR][1000 genomes]
rs9461837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9461948	1.00[AMR][1000 genomes]
rs9469100	1.00[AMR][1000 genomes]
rs9469269	1.00[AMR][1000 genomes]
rs9469270	1.00[AMR][1000 genomes]
rs9469271	1.00[AMR][1000 genomes]
rs9469320	1.00[AMR][1000 genomes]
rs9469350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469587	1.00[AMR][1000 genomes]
rs9469630	1.00[AMR][1000 genomes]
rs9469674	1.00[AMR][1000 genomes]
rs9469768	1.00[AMR][1000 genomes]
rs9986328	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11522000-11536400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:11527000-11537000	Weak transcription	Placenta	Placenta
3	chr6:11527400-11537200	Weak transcription	Gastric	stomach
4	chr6:11528000-11536800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:11530800-11533000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:11531200-11536800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:11531400-11536200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:11531400-11536200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:11531600-11533000	Enhancers	Stomach Smooth Muscle	stomach
10	chr6:11531800-11536000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:11531800-11537400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:11532000-11535600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:11532000-11535600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:11532000-11535800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:11532000-11536000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:11532400-11536200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:11532600-11532800	Flanking Active TSS	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links