Variant report

Variant	rs73357857
Chromosome Location	chr6:11565569-11565570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11141294..11142898-chr6:11563806..11566787,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55892883	0.87[AFR][1000 genomes]
rs56040297	1.00[AFR][1000 genomes]
rs61000931	1.00[AFR][1000 genomes]
rs61204092	0.87[AFR][1000 genomes]
rs61402325	0.87[AFR][1000 genomes]
rs73357837	1.00[AFR][1000 genomes]
rs73357838	1.00[AFR][1000 genomes]
rs73357850	1.00[AFR][1000 genomes]
rs73357856	1.00[AFR][1000 genomes]
rs73357860	1.00[AFR][1000 genomes]
rs73357871	0.87[AFR][1000 genomes]
rs73357876	0.87[AFR][1000 genomes]
rs73721761	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1015234	chr6:11545582-11583516	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11540600-11566600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:11548000-11566600	Weak transcription	Placenta	Placenta
3	chr6:11548200-11565800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:11551600-11566600	Weak transcription	Aorta	Aorta
5	chr6:11552800-11566800	Weak transcription	Brain Anterior Caudate	brain
6	chr6:11553400-11565800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:11553400-11566600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:11553400-11566800	Weak transcription	Gastric	stomach
9	chr6:11553400-11567000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:11556400-11568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:11556800-11566800	Weak transcription	Lung	lung
12	chr6:11556800-11571600	Weak transcription	Ovary	ovary
13	chr6:11557000-11575600	Weak transcription	Spleen	Spleen
14	chr6:11557200-11566200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:11557200-11575400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:11557400-11565800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:11557400-11573200	Weak transcription	Psoas Muscle	Psoas
18	chr6:11558400-11566800	Weak transcription	Fetal Stomach	stomach
19	chr6:11559000-11566400	Weak transcription	Fetal Brain Female	brain
20	chr6:11559200-11566000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:11559400-11565800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:11559800-11566600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:11561400-11566000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:11561800-11565800	Weak transcription	Adipose Nuclei	Adipose
25	chr6:11562200-11566400	Weak transcription	Brain Germinal Matrix	brain
26	chr6:11562400-11565800	Weak transcription	Primary T cells from cord blood	blood
27	chr6:11563400-11575600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:11564000-11566200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:11564200-11566000	Weak transcription	Dnd41	blood
30	chr6:11564200-11566800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:11564200-11569200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:11564200-11573400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr6:11564400-11566200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:11564600-11566600	Weak transcription	HSMMtube	muscle
35	chr6:11564600-11572800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:11564800-11566400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:11564800-11566600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr6:11564800-11566600	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:11565000-11566000	Enhancers	Brain Hippocampus Middle	brain
40	chr6:11565000-11566800	Weak transcription	Liver	Liver
41	chr6:11565000-11566800	Weak transcription	HepG2	liver
42	chr6:11565200-11565800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:11565200-11566000	Enhancers	Brain Substantia Nigra	brain
44	chr6:11565200-11566200	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:11565200-11566400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr6:11565200-11566600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr6:11565200-11566600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:11565200-11566800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr6:11565200-11568800	Weak transcription	Colon Smooth Muscle	Colon
50	chr6:11565200-11569600	Weak transcription	Fetal Thymus	thymus

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