Variant report

Variant	rs73357860
Chromosome Location	chr6:11567654-11567655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55892883	0.87[AFR][1000 genomes]
rs56040297	1.00[AFR][1000 genomes]
rs61000931	1.00[AFR][1000 genomes]
rs61204092	0.87[AFR][1000 genomes]
rs61402325	0.87[AFR][1000 genomes]
rs73357837	1.00[AFR][1000 genomes]
rs73357838	1.00[AFR][1000 genomes]
rs73357850	1.00[AFR][1000 genomes]
rs73357856	1.00[AFR][1000 genomes]
rs73357857	1.00[AFR][1000 genomes]
rs73357871	0.87[AFR][1000 genomes]
rs73357876	0.87[AFR][1000 genomes]
rs73721761	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1015234	chr6:11545582-11583516	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11556400-11568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:11556800-11571600	Weak transcription	Ovary	ovary
3	chr6:11557000-11575600	Weak transcription	Spleen	Spleen
4	chr6:11557200-11575400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:11557400-11573200	Weak transcription	Psoas Muscle	Psoas
6	chr6:11563400-11575600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:11564200-11569200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:11564200-11573400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:11564600-11572800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:11565200-11568800	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:11565200-11569600	Weak transcription	Fetal Thymus	thymus
12	chr6:11565200-11575400	Weak transcription	Right Ventricle	heart
13	chr6:11565800-11567800	Strong transcription	Primary B cells from cord blood	blood
14	chr6:11565800-11567800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:11565800-11567800	Strong transcription	Adipose Nuclei	Adipose
16	chr6:11565800-11568200	Strong transcription	Primary T cells from cord blood	blood
17	chr6:11565800-11568200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:11565800-11568600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:11565800-11568600	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:11565800-11569800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:11565800-11575400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:11566000-11568000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:11566000-11568600	Strong transcription	Dnd41	blood
24	chr6:11566000-11569000	Weak transcription	GM12878-XiMat	blood
25	chr6:11566200-11567800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:11566200-11568200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:11566400-11568000	Strong transcription	Brain Cingulate Gyrus	brain
28	chr6:11566600-11567800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:11566600-11567800	Strong transcription	HSMMtube	muscle
30	chr6:11566600-11568200	Genic enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:11566600-11568200	Strong transcription	Fetal Muscle Leg	muscle
32	chr6:11566600-11568200	Strong transcription	Placenta	Placenta
33	chr6:11566800-11567800	Strong transcription	Brain Anterior Caudate	brain
34	chr6:11566800-11567800	Strong transcription	Brain Hippocampus Middle	brain
35	chr6:11566800-11567800	Strong transcription	Lung	lung
36	chr6:11566800-11567800	Strong transcription	HepG2	liver
37	chr6:11566800-11568000	Strong transcription	Liver	Liver
38	chr6:11566800-11568000	Strong transcription	Brain Angular Gyrus	brain
39	chr6:11566800-11568200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:11567000-11579800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:11567200-11573000	Weak transcription	Brain Germinal Matrix	brain
42	chr6:11567400-11568000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
43	chr6:11567400-11575400	Weak transcription	A549	lung
44	chr6:11567600-11568200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:11567600-11568400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
46	chr6:11567600-11569400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr6:11567600-11569800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr6:11567600-11570200	Weak transcription	Aorta	Aorta
49	chr6:11567600-11571000	Weak transcription	Pancreas	Pancrea
50	chr6:11567600-11571400	Weak transcription	Gastric	stomach

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