Variant report

Variant	rs73357876
Chromosome Location	chr6:11590744-11590745
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11585369..11588205-chr6:11589273..11592735,3	MCF-7	breast:
2	chr6:11589569..11591448-chr6:12289511..12291212,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078401	Chromatin interaction

rs_ID	r²[population]
rs55892883	0.87[AFR][1000 genomes]
rs56040297	0.87[AFR][1000 genomes]
rs61000931	0.87[AFR][1000 genomes]
rs61204092	0.87[AFR][1000 genomes]
rs61402325	0.87[AFR][1000 genomes]
rs73357837	0.87[AFR][1000 genomes]
rs73357838	0.87[AFR][1000 genomes]
rs73357850	0.87[AFR][1000 genomes]
rs73357856	0.87[AFR][1000 genomes]
rs73357857	0.87[AFR][1000 genomes]
rs73357860	0.87[AFR][1000 genomes]
rs73357871	0.87[AFR][1000 genomes]
rs73721761	0.87[AFR][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11586200-11591200	Enhancers	NHLF	lung
2	chr6:11587000-11592400	Weak transcription	Liver	Liver
3	chr6:11587200-11592600	Weak transcription	Ovary	ovary
4	chr6:11587200-11593000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:11587400-11591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:11587400-11592200	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:11587400-11592400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:11587400-11592600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:11587400-11592800	Weak transcription	Placenta	Placenta
10	chr6:11587400-11593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:11587600-11592800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:11588600-11591000	Weak transcription	Aorta	Aorta
13	chr6:11589400-11590800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:11589400-11591200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:11589400-11591200	Enhancers	HUVEC	blood vessel
16	chr6:11589400-11591200	Enhancers	NH-A	brain
17	chr6:11589400-11591200	Enhancers	NHDF-Ad	bronchial
18	chr6:11589400-11591200	Enhancers	Osteobl	bone
19	chr6:11589400-11591400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:11589600-11590800	Enhancers	A549	lung
21	chr6:11589800-11591000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:11589800-11591200	Enhancers	Fetal Lung	lung
23	chr6:11589800-11591200	Enhancers	Fetal Stomach	stomach
24	chr6:11590000-11591200	Enhancers	HSMM	muscle
25	chr6:11590400-11590800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:11590400-11591200	Enhancers	Rectal Smooth Muscle	rectum
27	chr6:11590600-11590800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr6:11590600-11591000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:11590600-11591200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:11590600-11591200	Enhancers	HSMMtube	muscle
31	chr6:11590600-11591200	Enhancers	NHEK	skin
32	chr6:11590600-11592200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:11590600-11592600	Weak transcription	Placenta Amnion	Placenta Amnion

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