Variant report

Variant	rs73361714
Chromosome Location	chr7:70616304-70616305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12698966	1.00[AMR][1000 genomes]
rs56795865	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56942091	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58392053	0.83[AFR][1000 genomes]
rs73357805	1.00[AMR][1000 genomes]
rs73361706	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361707	0.87[AFR][1000 genomes]
rs73361715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361771	1.00[AMR][1000 genomes]
rs73361776	1.00[AMR][1000 genomes]
rs7803452	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70611600-70623800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70611800-70617000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:70611800-70620200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:70612000-70617000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:70612000-70619800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:70612000-70636400	Weak transcription	Ovary	ovary
7	chr7:70612200-70650600	Weak transcription	Fetal Lung	lung
8	chr7:70613400-70622600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:70613400-70624600	Weak transcription	Right Atrium	heart
10	chr7:70614600-70617400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:70614800-70617000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:70615000-70617000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:70615000-70617200	Weak transcription	Brain Germinal Matrix	brain
14	chr7:70615000-70622400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:70615200-70617000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:70615200-70632800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:70615400-70619600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:70615400-70619800	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:70615400-70620600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:70616000-70632800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:70616200-70617200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:70616200-70620200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:70616200-70621800	Weak transcription	Fetal Stomach	stomach

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