Variant report

Variant	rs73363367
Chromosome Location	chr7:64408376-64408377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:64407101..64409765-chr7:64410479..64412336,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10239449	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10243927	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10253614	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10253636	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10256006	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10256702	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10258018	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10259016	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10259713	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10265110	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10269760	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10274861	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10275331	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10499782	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12333583	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12531509	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12531631	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12533393	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12535068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12535862	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12536001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12537516	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12537864	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12537906	0.92[ASN][1000 genomes]
rs12538078	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12539165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12539507	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12539509	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1405009	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1534148	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17146448	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1830077	0.90[ASN][1000 genomes]
rs1830080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1880658	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28398905	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28591657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2863926	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2863985	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28664768	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3829005	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4382350	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4573137	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4718164	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58472271	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59122385	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67615162	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72504857	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73354396	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73355758	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73363366	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7783460	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7802123	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs884965	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9987044	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9987071	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv888282	chr7:64299645-64511564	Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
10	esv3506582	chr7:64323055-64563984	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3506583	chr7:64323055-64563984	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv1019180	chr7:64329889-64512842	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
13	nsv888283	chr7:64343985-64511564	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
14	esv2752165	chr7:64345822-65208605	Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
15	nsv888284	chr7:64406439-64562139	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64407200-64408400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
2	chr7:64407200-64408400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
3	chr7:64407200-64408400	Bivalent Enhancer	Fetal Brain Male	brain
4	chr7:64407400-64408400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr7:64407400-64408400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:64407400-64408400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr7:64407400-64408400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr7:64407400-64408400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr7:64407400-64408400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:64407400-64408400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr7:64407400-64408400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
12	chr7:64407400-64408400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:64407400-64408400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:64407400-64408400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:64407400-64408400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:64407400-64408400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
17	chr7:64407400-64408400	Bivalent Enhancer	Placenta	Placenta
18	chr7:64407400-64408400	Flanking Active TSS	Right Ventricle	heart
19	chr7:64407400-64408400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
20	chr7:64407400-64408600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr7:64407400-64408600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
22	chr7:64407400-64408600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr7:64407400-64408600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr7:64407400-64408800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
25	chr7:64407600-64408400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:64407600-64408400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:64407600-64408400	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
28	chr7:64407600-64408400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
29	chr7:64407600-64408400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
30	chr7:64407600-64408400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:64407600-64408400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
32	chr7:64407600-64408400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:64407600-64408400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:64407600-64408400	Active TSS	Brain Angular Gyrus	brain
35	chr7:64407600-64408400	Flanking Active TSS	Esophagus	oesophagus
36	chr7:64407600-64408400	Bivalent Enhancer	Fetal Lung	lung
37	chr7:64407600-64408400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
38	chr7:64407600-64408400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
39	chr7:64407600-64408400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
40	chr7:64407600-64408400	Flanking Active TSS	Ovary	ovary
41	chr7:64407600-64408400	Flanking Active TSS	Pancreas	Pancrea
42	chr7:64407600-64408400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
43	chr7:64407600-64408400	Bivalent/Poised TSS	NH-A	brain
44	chr7:64407600-64408600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:64407600-64408800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
46	chr7:64407800-64408400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:64407800-64408400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:64407800-64408400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:64407800-64408400	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
50	chr7:64407800-64408400	Flanking Active TSS	Liver	Liver

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