Variant report

Variant	rs7783460
Chromosome Location	chr7:64351384-64351385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:64348444-64352610	PBDE	blood:	n/a	n/a
2	TEAD4	chr7:64351383-64352461	K562	blood:	n/a	n/a
3	GATA1	chr7:64351026-64353874	PBDE	blood:	n/a	chr7:64352484-64352494 chr7:64352534-64352543
4	GATA1	chr7:64351000-64353071	K562	blood:	n/a	chr7:64352484-64352494 chr7:64352534-64352543
5	POLR2A	chr7:64351339-64352336	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:64345757..64347589-chr7:64351014..64353937,2	K562	blood:
2	chr7:64351381..64353400-chr7:64363667..64366418,2	K562	blood:

Variant related genes	Relation type
ENSG00000189316	TF binding region

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10239449	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10243927	0.94[EUR][1000 genomes]
rs10253614	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10253636	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10256006	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10256702	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10258018	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10259016	0.94[EUR][1000 genomes]
rs10259713	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10265110	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10269760	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10274861	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10275331	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10499782	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12333583	0.97[EUR][1000 genomes]
rs12531509	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12531631	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12533393	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12535068	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12535862	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12536001	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12537516	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12537864	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12537906	0.86[ASN][1000 genomes]
rs12538078	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12539165	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12539507	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12539509	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13246774	0.84[AFR][1000 genomes]
rs1405009	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1534148	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17146448	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1830077	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1830079	0.86[AFR][1000 genomes]
rs1830080	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1880658	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28398905	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28591657	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2863926	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2863985	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28664768	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3829005	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4382350	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4573137	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4718164	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58472271	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59122385	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6460208	0.88[AFR][1000 genomes]
rs67615162	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72504857	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73354396	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73355758	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73363366	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73363367	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7797427	0.86[AFR][1000 genomes]
rs7802123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs884103	0.98[AFR][1000 genomes]
rs884965	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9987044	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9987071	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv1033291	chr7:64273434-64406276	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv508457	chr7:64286522-64391112	Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
11	esv1797468	chr7:64296309-64356050	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv888282	chr7:64299645-64511564	Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
13	nsv1018967	chr7:64318129-64380869	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv3506582	chr7:64323055-64563984	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	esv3506583	chr7:64323055-64563984	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv1019180	chr7:64329889-64512842	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv888283	chr7:64343985-64511564	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
18	esv2752165	chr7:64345822-65208605	Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7783460	ZNF273	cis	Esophagus Mucosa	GTEx

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64349800-64353400	Enhancers	Esophagus	oesophagus
2	chr7:64350000-64351400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr7:64350000-64352000	Enhancers	Ovary	ovary
4	chr7:64350000-64352800	Enhancers	Brain Substantia Nigra	brain
5	chr7:64350000-64353000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:64350200-64351600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:64350200-64352000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr7:64350200-64352800	Enhancers	Stomach Smooth Muscle	stomach
9	chr7:64350400-64351400	Enhancers	Brain Cingulate Gyrus	brain
10	chr7:64350400-64351400	Enhancers	Pancreas	Pancrea
11	chr7:64350400-64352000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:64350400-64353400	Enhancers	Brain Anterior Caudate	brain
13	chr7:64350600-64352400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr7:64350600-64353200	Enhancers	Rectal Smooth Muscle	rectum
15	chr7:64350800-64351800	Enhancers	HMEC	breast
16	chr7:64350800-64352000	Enhancers	NHEK	skin
17	chr7:64350800-64352200	Bivalent Enhancer	HepG2	liver
18	chr7:64350800-64352400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:64350800-64353400	Enhancers	Colon Smooth Muscle	Colon
20	chr7:64351000-64351400	Enhancers	Brain Angular Gyrus	brain
21	chr7:64351000-64352000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:64351000-64352000	Enhancers	HSMMtube	muscle
23	chr7:64351000-64352000	Flanking Active TSS	K562	blood
24	chr7:64351000-64352400	Enhancers	Right Atrium	heart
25	chr7:64351000-64352600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:64351000-64353000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:64351200-64351400	Bivalent Enhancer	Brain Germinal Matrix	brain
28	chr7:64351200-64351400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr7:64351200-64351400	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr7:64351200-64351400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr7:64351200-64351800	Enhancers	Aorta	Aorta
32	chr7:64351200-64351800	Enhancers	Brain Hippocampus Middle	brain
33	chr7:64351200-64352000	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr7:64351200-64352600	Enhancers	Osteobl	bone
35	chr7:64351200-64352800	Weak transcription	Gastric	stomach
36	chr7:64351200-64363200	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links