Variant report

Variant	rs73366823
Chromosome Location	chr6:11338448-11338449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11227753..11234147-chr6:11338119..11344884,13	MCF-7	breast:
2	chr6:11325686..11327931-chr6:11338135..11341072,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73366824	1.00[EUR][1000 genomes]
rs73366861	1.00[EUR][1000 genomes]
rs73366868	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11329200-11343600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:11330400-11350800	Weak transcription	Lung	lung
3	chr6:11331200-11339600	Weak transcription	Placenta	Placenta
4	chr6:11331400-11347200	Weak transcription	Spleen	Spleen
5	chr6:11331600-11348200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:11332000-11339800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:11332200-11344000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:11332200-11352400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:11332400-11341400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:11332400-11346400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:11332800-11344600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:11333200-11341000	Weak transcription	Aorta	Aorta
13	chr6:11333600-11342800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:11333800-11343000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:11334000-11340600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:11334000-11341600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:11334000-11353600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:11334200-11339600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:11334200-11341200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:11334200-11341200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:11334200-11350800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:11334400-11341400	Weak transcription	Thymus	Thymus
23	chr6:11334400-11343000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:11334400-11344600	Weak transcription	Fetal Thymus	thymus
25	chr6:11335000-11340800	Strong transcription	GM12878-XiMat	blood
26	chr6:11335200-11342800	Strong transcription	Primary B cells from cord blood	blood
27	chr6:11335400-11342000	Strong transcription	Primary T cells from cord blood	blood
28	chr6:11335800-11342200	Strong transcription	Primary B cells from peripheral blood	blood
29	chr6:11336400-11341000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:11336800-11341200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:11338400-11339600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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