Variant report

Variant	rs73366824
Chromosome Location	chr6:11341275-11341276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11327957..11331694-chr6:11339618..11342162,3	MCF-7	breast:
2	chr6:11227753..11234147-chr6:11338119..11344884,13	MCF-7	breast:
3	chr6:11339317..11341448-chr6:11355091..11357842,2	MCF-7	breast:
4	chr6:11339887..11342299-chr6:11361648..11364583,2	MCF-7	breast:
5	chr6:11289005..11291009-chr6:11339991..11342584,2	MCF-7	breast:
6	chr6:11340393..11342489-chr6:11432505..11435028,2	MCF-7	breast:
7	chr6:11316228..11320319-chr6:11338551..11345302,8	MCF-7	breast:
8	chr6:11233107..11235144-chr6:11339489..11341330,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs58716971	1.00[AMR][1000 genomes]
rs59791855	1.00[AMR][1000 genomes]
rs61378967	1.00[AMR][1000 genomes]
rs6940009	1.00[AMR][1000 genomes]
rs73351939	1.00[AMR][1000 genomes]
rs73351942	1.00[AMR][1000 genomes]
rs73351967	1.00[AMR][1000 genomes]
rs73351970	1.00[AMR][1000 genomes]
rs73351978	1.00[AMR][1000 genomes]
rs73351980	1.00[AMR][1000 genomes]
rs73366823	1.00[EUR][1000 genomes]
rs73366861	1.00[EUR][1000 genomes]
rs73366868	1.00[EUR][1000 genomes]
rs73368833	1.00[AMR][1000 genomes]
rs7761428	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11329200-11343600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:11330400-11350800	Weak transcription	Lung	lung
3	chr6:11331400-11347200	Weak transcription	Spleen	Spleen
4	chr6:11331600-11348200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:11332200-11344000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:11332200-11352400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:11332400-11341400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:11332400-11346400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:11332800-11344600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:11333600-11342800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:11333800-11343000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:11334000-11341600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:11334000-11353600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:11334200-11350800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:11334400-11341400	Weak transcription	Thymus	Thymus
16	chr6:11334400-11343000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:11334400-11344600	Weak transcription	Fetal Thymus	thymus
18	chr6:11335200-11342800	Strong transcription	Primary B cells from cord blood	blood
19	chr6:11335400-11342000	Strong transcription	Primary T cells from cord blood	blood
20	chr6:11335800-11342200	Strong transcription	Primary B cells from peripheral blood	blood
21	chr6:11339600-11341800	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:11339600-11342400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:11339800-11344000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:11340000-11341400	Weak transcription	Hela-S3	cervix
25	chr6:11340000-11341600	Weak transcription	HMEC	breast
26	chr6:11340000-11342800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:11340000-11343000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:11340000-11343400	Weak transcription	Placenta	Placenta
29	chr6:11340600-11341400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr6:11340600-11343400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:11340800-11342400	ZNF genes & repeats	GM12878-XiMat	blood
32	chr6:11341000-11341800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:11341000-11341800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:11341000-11342000	ZNF genes & repeats	Aorta	Aorta
35	chr6:11341200-11341400	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr6:11341200-11341600	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:11341200-11342000	Strong transcription	Primary T cells fromperipheralblood	blood

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