Variant report

Variant	rs58716971
Chromosome Location	chr6:11416238-11416239
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11228618..11230806-chr6:11414420..11416664,2	MCF-7	breast:
2	chr6:11387321..11394874-chr6:11409302..11416244,8	MCF-7	breast:
3	chr6:11413490..11417171-chr6:11433636..11437714,3	MCF-7	breast:
4	chr6:11356092..11358157-chr6:11415666..11417240,2	MCF-7	breast:
5	chr6:11415142..11417104-chr6:11428067..11431006,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10046197	1.00[EUR][1000 genomes]
rs1150563	1.00[EUR][1000 genomes]
rs1195651	1.00[EUR][1000 genomes]
rs11962713	1.00[EUR][1000 genomes]
rs12332876	1.00[EUR][1000 genomes]
rs2807965	1.00[EUR][1000 genomes]
rs295057	1.00[EUR][1000 genomes]
rs477973	1.00[EUR][1000 genomes]
rs544766	1.00[EUR][1000 genomes]
rs552548	1.00[EUR][1000 genomes]
rs585322	1.00[EUR][1000 genomes]
rs59791855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs609389	1.00[EUR][1000 genomes]
rs613353	1.00[EUR][1000 genomes]
rs61378967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs617146	1.00[EUR][1000 genomes]
rs656674	1.00[EUR][1000 genomes]
rs6936918	1.00[EUR][1000 genomes]
rs6940009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351967	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351970	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73355853	1.00[EUR][1000 genomes]
rs73366824	1.00[AMR][1000 genomes]
rs73368833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744252	1.00[EUR][1000 genomes]
rs7744403	1.00[EUR][1000 genomes]
rs7761428	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs821537	1.00[EUR][1000 genomes]
rs821541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11405400-11419400	Weak transcription	Aorta	Aorta
2	chr6:11411600-11417000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:11412400-11416400	Weak transcription	Fetal Kidney	kidney
4	chr6:11412600-11416400	Weak transcription	NH-A	brain
5	chr6:11412600-11425600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:11412600-11425600	Weak transcription	NHLF	lung
7	chr6:11412800-11416400	Weak transcription	HSMM	muscle
8	chr6:11413600-11416800	Enhancers	NHEK	skin
9	chr6:11413800-11416600	Enhancers	HepG2	liver
10	chr6:11415000-11425800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:11415200-11418200	Weak transcription	HUVEC	blood vessel
12	chr6:11415200-11418800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:11415400-11416400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:11415800-11416600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:11416200-11416600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr6:11416200-11416600	Enhancers	A549	lung
17	chr6:11416200-11416800	Enhancers	HMEC	breast
18	chr6:11416200-11419800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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