Variant report

Variant	rs613353
Chromosome Location	chr6:11496184-11496185
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:10954770..10955384-chr6:11496144..11496654,2	K562	blood:
2	chr6:11143734..11145501-chr6:11496107..11497580,26	MCF-7	breast:
3	chr6:11093559..11095482-chr6:11495067..11496598,2	MCF-7	breast:
4	chr6:11224747..11226720-chr6:11494534..11496251,2	MCF-7	breast:
5	chr6:11232197..11234142-chr6:11494778..11496668,2	MCF-7	breast:
6	chr6:11390303..11392933-chr6:11494450..11496978,4	MCF-7	breast:
7	chr6:11144071..11145293-chr6:11495634..11497487,8	K562	blood:
8	chr6:11433709..11436638-chr6:11494109..11496934,3	MCF-7	breast:
9	chr6:11143950..11145908-chr6:11496120..11497314,14	MCF-7	breast:
10	chr6:11093792..11094375-chr6:11495993..11496697,2	MCF-7	breast:
11	chr6:10951927..10952494-chr6:11496141..11497077,2	K562	blood:
12	chr6:11489653..11491693-chr6:11494680..11496394,2	MCF-7	breast:
13	chr6:11146384..11147264-chr6:11496154..11496866,2	MCF-7	breast:
14	chr6:11356223..11359281-chr6:11494815..11498233,5	MCF-7	breast:
15	chr6:11230707..11237186-chr6:11493072..11498269,11	MCF-7	breast:
16	chr6:11172464..11173392-chr6:11496112..11497153,5	K562	blood:
17	chr6:11143454..11145339-chr6:11495146..11498003,3	MCF-7	breast:
18	chr6:11241591..11242336-chr6:11496079..11496891,3	K562	blood:
19	chr6:11142754..11146580-chr6:11494452..11498982,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000224531	Chromatin interaction
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10046197	1.00[EUR][1000 genomes]
rs1150563	1.00[EUR][1000 genomes]
rs1150569	1.00[EUR][1000 genomes]
rs1195651	1.00[EUR][1000 genomes]
rs11962713	1.00[EUR][1000 genomes]
rs12332876	1.00[EUR][1000 genomes]
rs2807965	1.00[EUR][1000 genomes]
rs295057	1.00[EUR][1000 genomes]
rs477973	1.00[EUR][1000 genomes]
rs544766	1.00[EUR][1000 genomes]
rs552548	1.00[EUR][1000 genomes]
rs585322	1.00[EUR][1000 genomes]
rs58716971	1.00[EUR][1000 genomes]
rs59791855	1.00[EUR][1000 genomes]
rs609389	1.00[EUR][1000 genomes]
rs61378967	1.00[EUR][1000 genomes]
rs61679516	1.00[EUR][1000 genomes]
rs617146	1.00[EUR][1000 genomes]
rs656674	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6936918	1.00[EUR][1000 genomes]
rs6940009	1.00[EUR][1000 genomes]
rs73351939	1.00[EUR][1000 genomes]
rs73351942	1.00[EUR][1000 genomes]
rs73351967	1.00[EUR][1000 genomes]
rs73351970	1.00[EUR][1000 genomes]
rs73351978	1.00[EUR][1000 genomes]
rs73351980	1.00[EUR][1000 genomes]
rs73355853	1.00[EUR][1000 genomes]
rs73368833	1.00[EUR][1000 genomes]
rs7744252	1.00[EUR][1000 genomes]
rs7744403	1.00[EUR][1000 genomes]
rs7761428	1.00[EUR][1000 genomes]
rs821537	1.00[EUR][1000 genomes]
rs821541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11486800-11496800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:11491800-11497200	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:11492000-11496200	Enhancers	Primary B cells from cord blood	blood
4	chr6:11492000-11498200	Enhancers	A549	lung
5	chr6:11492200-11497400	Enhancers	HepG2	liver
6	chr6:11493000-11499800	Weak transcription	NH-A	brain
7	chr6:11493400-11496200	Weak transcription	Osteobl	bone
8	chr6:11493400-11497600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:11493400-11498200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:11493600-11496400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:11493600-11496800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:11494200-11496400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:11494200-11498200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:11494400-11500600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:11494600-11496600	Enhancers	Fetal Heart	heart
16	chr6:11494600-11497200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:11494800-11496400	Enhancers	Fetal Stomach	stomach
18	chr6:11494800-11496600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:11495000-11497000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:11495000-11497200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:11495200-11496200	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:11495200-11496200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:11495200-11496400	Enhancers	Brain Angular Gyrus	brain
24	chr6:11495400-11496600	Weak transcription	Placenta	Placenta
25	chr6:11495400-11497000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:11495600-11496400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:11495600-11496600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:11495600-11496600	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr6:11495600-11496600	Enhancers	Fetal Lung	lung
30	chr6:11495800-11496400	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr6:11495800-11496400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:11495800-11496600	Enhancers	Fetal Kidney	kidney
33	chr6:11495800-11496800	Enhancers	Hela-S3	cervix
34	chr6:11495800-11497000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:11495800-11497000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:11495800-11497200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:11496000-11496200	Enhancers	Stomach Mucosa	stomach
38	chr6:11496000-11496400	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr6:11496000-11496600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:11496000-11496600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:11496000-11496600	Enhancers	Brain Anterior Caudate	brain
42	chr6:11496000-11496800	Weak transcription	Left Ventricle	heart
43	chr6:11496000-11496800	Enhancers	GM12878-XiMat	blood
44	chr6:11496000-11497000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:11496000-11497000	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:11496000-11497000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:11496000-11497200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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