Variant report

Variant	rs6940009
Chromosome Location	chr6:11430514-11430515
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11427951..11430915-chr6:11435068..11437007,2	MCF-7	breast:
2	chr6:11227633..11230379-chr6:11430461..11433425,2	MCF-7	breast:
3	chr6:11415153..11417889-chr6:11429693..11432070,2	MCF-7	breast:
4	chr6:11415142..11417104-chr6:11428067..11431006,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233656	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10046197	1.00[EUR][1000 genomes]
rs1150563	1.00[EUR][1000 genomes]
rs1195651	1.00[EUR][1000 genomes]
rs11962713	1.00[EUR][1000 genomes]
rs12332876	1.00[EUR][1000 genomes]
rs2807965	1.00[EUR][1000 genomes]
rs295057	1.00[EUR][1000 genomes]
rs477973	1.00[EUR][1000 genomes]
rs544766	1.00[EUR][1000 genomes]
rs552548	1.00[EUR][1000 genomes]
rs585322	1.00[EUR][1000 genomes]
rs58716971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59791855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs609389	1.00[EUR][1000 genomes]
rs613353	1.00[EUR][1000 genomes]
rs61378967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs617146	1.00[EUR][1000 genomes]
rs656674	1.00[EUR][1000 genomes]
rs6936918	1.00[EUR][1000 genomes]
rs73351939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73355853	1.00[EUR][1000 genomes]
rs73366824	1.00[AMR][1000 genomes]
rs73368833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744252	1.00[EUR][1000 genomes]
rs7744403	1.00[EUR][1000 genomes]
rs7761428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs821537	1.00[EUR][1000 genomes]
rs821541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11423200-11431800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:11423400-11430600	Enhancers	NHDF-Ad	bronchial
3	chr6:11423400-11434200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:11423600-11432200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:11423600-11435200	Enhancers	HepG2	liver
6	chr6:11423800-11435600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:11424600-11430600	Enhancers	Placenta	Placenta
8	chr6:11424600-11430800	Enhancers	Osteobl	bone
9	chr6:11424800-11430800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:11425000-11432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:11425600-11430600	Enhancers	NHLF	lung
12	chr6:11425600-11436200	Enhancers	Adipose Nuclei	Adipose
13	chr6:11425800-11430600	Enhancers	HSMMtube	muscle
14	chr6:11426400-11431800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:11427000-11432800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:11427400-11433400	Enhancers	NH-A	brain
17	chr6:11427600-11430600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:11427600-11430800	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:11427600-11430800	Enhancers	HSMM	muscle
20	chr6:11427800-11430600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:11427800-11430600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr6:11427800-11432000	Weak transcription	Aorta	Aorta
23	chr6:11428000-11430600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:11428000-11430600	Enhancers	Fetal Kidney	kidney
25	chr6:11428000-11434800	Weak transcription	Psoas Muscle	Psoas
26	chr6:11428000-11438000	Weak transcription	Esophagus	oesophagus
27	chr6:11428200-11430600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:11428200-11430600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:11428200-11430600	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr6:11428200-11431000	Enhancers	Primary B cells from cord blood	blood
31	chr6:11428200-11432400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:11428200-11434400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:11428400-11430600	Enhancers	Fetal Thymus	thymus
34	chr6:11428600-11430600	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:11428600-11433400	Weak transcription	Fetal Intestine Small	intestine
36	chr6:11428600-11434600	Weak transcription	Pancreas	Pancrea
37	chr6:11428800-11431600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:11428800-11431800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:11428800-11432800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:11429000-11430800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:11429400-11431200	Enhancers	A549	lung
42	chr6:11429400-11432400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:11429400-11432400	Weak transcription	Left Ventricle	heart
44	chr6:11429400-11433000	Weak transcription	Brain Anterior Caudate	brain
45	chr6:11429400-11433400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:11429400-11434600	Weak transcription	Fetal Lung	lung
47	chr6:11429400-11434800	Weak transcription	Right Atrium	heart
48	chr6:11429400-11434800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:11429600-11432200	Weak transcription	HMEC	breast
50	chr6:11429600-11432800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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