Variant report

Variant	rs7744252
Chromosome Location	chr6:11437628-11437629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11436480..11438117-chr6:11438590..11440961,2	MCF-7	breast:
2	chr6:11413490..11417171-chr6:11433636..11437714,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10046197	1.00[EUR][1000 genomes]
rs1150563	1.00[EUR][1000 genomes]
rs1195651	1.00[EUR][1000 genomes]
rs11962713	1.00[EUR][1000 genomes]
rs12332876	1.00[EUR][1000 genomes]
rs2807965	1.00[EUR][1000 genomes]
rs28854540	0.88[AFR][1000 genomes]
rs295057	1.00[EUR][1000 genomes]
rs477973	1.00[EUR][1000 genomes]
rs544766	1.00[EUR][1000 genomes]
rs552548	1.00[EUR][1000 genomes]
rs585322	1.00[EUR][1000 genomes]
rs58716971	1.00[EUR][1000 genomes]
rs59791855	1.00[EUR][1000 genomes]
rs609389	1.00[EUR][1000 genomes]
rs613353	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs61378967	1.00[EUR][1000 genomes]
rs61679516	1.00[EUR][1000 genomes]
rs617146	1.00[EUR][1000 genomes]
rs656674	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6919600	0.89[AFR][1000 genomes]
rs6936918	1.00[EUR][1000 genomes]
rs6940009	1.00[EUR][1000 genomes]
rs73351939	1.00[EUR][1000 genomes]
rs73351942	1.00[EUR][1000 genomes]
rs73351967	1.00[EUR][1000 genomes]
rs73351970	1.00[EUR][1000 genomes]
rs73351978	1.00[EUR][1000 genomes]
rs73351980	1.00[EUR][1000 genomes]
rs73355853	1.00[EUR][1000 genomes]
rs73368833	1.00[EUR][1000 genomes]
rs7744403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761428	1.00[EUR][1000 genomes]
rs821537	1.00[EUR][1000 genomes]
rs821541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11428000-11438000	Weak transcription	Esophagus	oesophagus
2	chr6:11431000-11439200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:11432600-11438000	Weak transcription	Left Ventricle	heart
4	chr6:11434600-11437800	Weak transcription	HUVEC	blood vessel
5	chr6:11434800-11438200	Enhancers	Aorta	Aorta
6	chr6:11435200-11441000	Weak transcription	Fetal Brain Male	brain
7	chr6:11435400-11437800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:11435400-11438000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:11435400-11438200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:11435600-11437800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:11435600-11438000	Weak transcription	Right Atrium	heart
12	chr6:11435600-11438000	Weak transcription	HMEC	breast
13	chr6:11435600-11438000	Weak transcription	NHDF-Ad	bronchial
14	chr6:11435600-11438000	Weak transcription	NHLF	lung
15	chr6:11435600-11438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:11435600-11438200	Weak transcription	HSMMtube	muscle
17	chr6:11435600-11438200	Weak transcription	Osteobl	bone
18	chr6:11435600-11439200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:11435800-11437800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:11435800-11438000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:11435800-11438000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:11435800-11438000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:11435800-11438200	Weak transcription	NH-A	brain
24	chr6:11435800-11438400	Weak transcription	Small Intestine	intestine
25	chr6:11436000-11438400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:11436200-11438000	Weak transcription	Adipose Nuclei	Adipose
27	chr6:11436200-11438600	Enhancers	Stomach Mucosa	stomach
28	chr6:11436400-11437800	Weak transcription	Lung	lung
29	chr6:11436400-11438000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:11436400-11438000	Weak transcription	A549	lung
31	chr6:11436600-11438400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:11436800-11438400	Enhancers	Placenta	Placenta
33	chr6:11437200-11438000	Weak transcription	Pancreas	Pancrea
34	chr6:11437600-11437800	Enhancers	Duodenum Mucosa	Duodenum
35	chr6:11437600-11438000	Weak transcription	HepG2	liver

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