Variant report

Variant	rs656674
Chromosome Location	chr6:11576130-11576131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11567697..11570956-chr6:11575966..11579057,3	K562	blood:
2	chr6:10954509..10955417-chr6:11575675..11576376,2	K562	blood:
3	chr6:11538203..11540393-chr6:11574176..11577432,3	MCF-7	breast:
4	chr6:11241627..11242532-chr6:11575629..11576424,3	K562	blood:
5	chr6:10954692..10955390-chr6:11575623..11576487,3	MCF-7	breast:
6	chr6:11143996..11145216-chr6:11575436..11576352,4	MCF-7	breast:
7	chr6:11144244..11145626-chr6:11575493..11576427,5	K562	blood:

Variant related genes	Relation type
ENSG00000205269	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10046197	1.00[EUR][1000 genomes]
rs1150563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150569	1.00[EUR][1000 genomes]
rs1195651	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11962713	1.00[EUR][1000 genomes]
rs12332876	1.00[EUR][1000 genomes]
rs2807965	1.00[EUR][1000 genomes]
rs295055	1.00[AMR][1000 genomes]
rs295057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs477973	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs544766	1.00[EUR][1000 genomes]
rs552548	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs585322	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58716971	1.00[EUR][1000 genomes]
rs59791855	1.00[EUR][1000 genomes]
rs609389	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs613353	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs61378967	1.00[EUR][1000 genomes]
rs61679516	1.00[EUR][1000 genomes]
rs617146	1.00[EUR][1000 genomes]
rs6936918	1.00[EUR][1000 genomes]
rs6940009	1.00[EUR][1000 genomes]
rs73351939	1.00[EUR][1000 genomes]
rs73351942	1.00[EUR][1000 genomes]
rs73351967	1.00[EUR][1000 genomes]
rs73351970	1.00[EUR][1000 genomes]
rs73351978	1.00[EUR][1000 genomes]
rs73351980	1.00[EUR][1000 genomes]
rs73355853	1.00[EUR][1000 genomes]
rs73368833	1.00[EUR][1000 genomes]
rs7744252	1.00[EUR][1000 genomes]
rs7744403	1.00[EUR][1000 genomes]
rs7761428	1.00[EUR][1000 genomes]
rs821537	1.00[EUR][1000 genomes]
rs821541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1015234	chr6:11545582-11583516	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11567000-11579800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:11567600-11577400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:11567600-11581400	Weak transcription	Fetal Brain Female	brain
4	chr6:11567600-11582600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:11567600-11586200	Weak transcription	Fetal Intestine Small	intestine
6	chr6:11567600-11586400	Weak transcription	Fetal Stomach	stomach
7	chr6:11567600-11586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:11567800-11580000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:11567800-11584200	Weak transcription	HSMMtube	muscle
10	chr6:11567800-11586400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:11568000-11577400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:11568000-11586200	Weak transcription	Liver	Liver
13	chr6:11568000-11586600	Weak transcription	Brain Angular Gyrus	brain
14	chr6:11568200-11578200	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:11568200-11578600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:11568600-11586800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:11571800-11586600	Weak transcription	Ovary	ovary
18	chr6:11574400-11578000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:11575400-11576400	Enhancers	GM12878-XiMat	blood
20	chr6:11575800-11576400	Strong transcription	Dnd41	blood
21	chr6:11575800-11579200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:11575800-11581000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:11575800-11584400	Weak transcription	HSMM	muscle
24	chr6:11575800-11586200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:11576000-11576200	Active TSS	Fetal Kidney	kidney
26	chr6:11576000-11576200	Genic enhancers	Monocytes-CD14+_RO01746	blood
27	chr6:11576000-11576400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:11576000-11577000	Weak transcription	Brain Anterior Caudate	brain
29	chr6:11576000-11577600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:11576000-11578800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr6:11576000-11580200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:11576000-11582600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:11576000-11584600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:11576000-11586200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:11576000-11586400	Weak transcription	HepG2	liver

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