Variant report

Variant	rs73368833
Chromosome Location	chr6:11404975-11404976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10046197	1.00[EUR][1000 genomes]
rs1195651	1.00[EUR][1000 genomes]
rs11962713	1.00[EUR][1000 genomes]
rs12332876	1.00[EUR][1000 genomes]
rs2807965	1.00[EUR][1000 genomes]
rs295057	1.00[EUR][1000 genomes]
rs477973	1.00[EUR][1000 genomes]
rs544766	1.00[EUR][1000 genomes]
rs552548	1.00[EUR][1000 genomes]
rs585322	1.00[EUR][1000 genomes]
rs58716971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59791855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs609389	1.00[EUR][1000 genomes]
rs613353	1.00[EUR][1000 genomes]
rs61378967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs617146	1.00[EUR][1000 genomes]
rs656674	1.00[EUR][1000 genomes]
rs6936918	1.00[EUR][1000 genomes]
rs6940009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351967	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351970	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73355853	1.00[EUR][1000 genomes]
rs73366824	1.00[AMR][1000 genomes]
rs7744252	1.00[EUR][1000 genomes]
rs7744403	1.00[EUR][1000 genomes]
rs7761428	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs821537	1.00[EUR][1000 genomes]
rs821541	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11394000-11405600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:11398800-11405200	Weak transcription	Spleen	Spleen
3	chr6:11399000-11410800	Weak transcription	Adipose Nuclei	Adipose
4	chr6:11402800-11406800	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:11403200-11405200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:11403200-11406600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:11403400-11405400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:11403600-11405600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:11403600-11406600	Enhancers	Primary B cells from cord blood	blood
10	chr6:11403600-11406600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:11403600-11406800	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:11403800-11407000	Weak transcription	Lung	lung
13	chr6:11404000-11405200	Weak transcription	Fetal Kidney	kidney
14	chr6:11404200-11405200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:11404200-11405800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:11404400-11405200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:11404400-11405600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:11404400-11405800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:11404600-11405200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:11404600-11405400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:11404800-11405000	Weak transcription	Aorta	Aorta
22	chr6:11404800-11405800	Enhancers	GM12878-XiMat	blood
23	chr6:11404800-11406600	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr6:11404800-11406800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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