Variant report

Variant	rs73366861
Chromosome Location	chr6:11369437-11369438
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73366823	1.00[EUR][1000 genomes]
rs73366824	1.00[EUR][1000 genomes]
rs73366868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11355200-11370800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:11357200-11371200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:11357800-11370400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:11359400-11369800	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:11361200-11370600	Weak transcription	Thymus	Thymus
6	chr6:11364600-11371200	Enhancers	HUVEC	blood vessel
7	chr6:11364600-11381200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:11364800-11370400	Weak transcription	Spleen	Spleen
9	chr6:11364800-11370800	Weak transcription	Placenta	Placenta
10	chr6:11365000-11370600	Weak transcription	Fetal Thymus	thymus
11	chr6:11365600-11374400	Weak transcription	Stomach Mucosa	stomach
12	chr6:11365600-11374800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:11365800-11369800	Weak transcription	Fetal Lung	lung
14	chr6:11366800-11369600	Enhancers	NHEK	skin
15	chr6:11366800-11369800	Enhancers	HMEC	breast
16	chr6:11366800-11371000	Enhancers	Fetal Kidney	kidney
17	chr6:11367000-11370600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:11367000-11370800	Weak transcription	Esophagus	oesophagus
19	chr6:11367200-11370000	Weak transcription	Brain Substantia Nigra	brain
20	chr6:11367200-11370200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:11367200-11370400	Weak transcription	Pancreas	Pancrea
22	chr6:11367600-11370200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:11367600-11372000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:11368000-11370800	Weak transcription	Right Ventricle	heart
25	chr6:11368000-11371000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:11368200-11370000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr6:11368200-11370000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:11368200-11370000	Weak transcription	Brain Anterior Caudate	brain
29	chr6:11368200-11370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:11368200-11370400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:11368200-11370400	Weak transcription	Gastric	stomach
32	chr6:11368200-11370600	Weak transcription	Fetal Stomach	stomach
33	chr6:11368400-11369600	Enhancers	A549	lung
34	chr6:11368400-11370000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:11368400-11370000	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:11368400-11370200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:11368400-11370200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:11368400-11370200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:11368400-11370400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:11368400-11370400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:11368400-11370600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:11368400-11370600	Weak transcription	Colonic Mucosa	Colon
43	chr6:11368400-11370600	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:11368400-11370600	Weak transcription	Lung	lung
45	chr6:11368400-11370600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:11368400-11370800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:11368400-11370800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:11368400-11371400	Weak transcription	Fetal Intestine Small	intestine
49	chr6:11368400-11371800	Enhancers	HepG2	liver
50	chr6:11368400-11373800	Weak transcription	Rectal Mucosa Donor 29	rectum

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