Variant report

Variant	rs73367149
Chromosome Location	chr21:17507384-17507385
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57410031	1.00[AMR][1000 genomes]
rs59616604	1.00[AMR][1000 genomes]
rs73352488	1.00[AMR][1000 genomes]
rs73352495	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354406	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354418	1.00[AMR][1000 genomes]
rs73354419	1.00[AMR][1000 genomes]
rs73354423	1.00[AMR][1000 genomes]
rs73367122	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367140	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367146	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3398505	chr21:17499130-17527355	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17505000-17507400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr21:17506200-17507400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr21:17506800-17507400	Enhancers	Adipose Nuclei	Adipose
4	chr21:17507000-17507400	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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