Variant report

Variant	rs73367509
Chromosome Location	chr6:12300473-12300474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10478731	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10478736	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17594577	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6941575	1.00[ASN][1000 genomes]
rs73367510	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73367515	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367519	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367521	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73367535	0.95[ASN][1000 genomes]
rs73367540	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73367541	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73367542	0.95[ASN][1000 genomes]
rs73367548	1.00[AMR][1000 genomes]
rs7776339	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12296600-12314400	Weak transcription	Spleen	Spleen
2	chr6:12297000-12301000	Weak transcription	HSMMtube	muscle
3	chr6:12297200-12311200	Weak transcription	HUVEC	blood vessel
4	chr6:12298200-12301000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:12298200-12301200	Weak transcription	Fetal Intestine Large	intestine
6	chr6:12298200-12302600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:12298200-12303200	Weak transcription	Fetal Intestine Small	intestine
8	chr6:12298200-12305600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:12298400-12300600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:12298400-12300600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:12298400-12301200	Genic enhancers	A549	lung
12	chr6:12298600-12301000	Weak transcription	NH-A	brain
13	chr6:12298600-12304000	Weak transcription	NHEK	skin
14	chr6:12300200-12303200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:12300400-12300800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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