Variant report

Variant	rs17594577
Chromosome Location	chr6:12306232-12306233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10478731	1.00[ASN][1000 genomes]
rs10478736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16872657	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16872662	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6927883	1.00[JPT][hapmap]
rs6941575	1.00[ASN][1000 genomes]
rs73367509	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367510	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367515	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367519	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367521	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367522	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73367540	0.95[ASN][1000 genomes]
rs73367541	0.95[ASN][1000 genomes]
rs73367542	0.95[ASN][1000 genomes]
rs7760229	1.00[JPT][hapmap]
rs7776339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv525684	chr6:12301462-12307264	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12296600-12314400	Weak transcription	Spleen	Spleen
2	chr6:12297200-12311200	Weak transcription	HUVEC	blood vessel
3	chr6:12304000-12306400	Enhancers	NHEK	skin
4	chr6:12304800-12306800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:12305400-12311400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:12305600-12306800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:12305800-12306800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:12306200-12309600	Transcr. at gene 5' and 3'	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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