Variant report

Variant	rs73367541
Chromosome Location	chr6:12314487-12314488
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12311955..12317813-chr6:12323964..12327057,7	MCF-7	breast:
2	chr6:12313605..12316031-chr6:12327791..12330633,2	MCF-7	breast:
3	chr6:12313162..12315409-chr6:12364413..12366976,2	MCF-7	breast:
4	chr6:12292182..12294128-chr6:12314408..12315965,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf105-7	chr6:12314289-12314628	NONHSAT107780

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10478731	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10478736	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17594577	0.95[ASN][1000 genomes]
rs6941575	0.95[ASN][1000 genomes]
rs73367509	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73367510	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73367515	0.95[ASN][1000 genomes]
rs73367519	0.95[ASN][1000 genomes]
rs73367521	0.95[ASN][1000 genomes]
rs73367522	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73367535	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73367542	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73367548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7776339	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12312200-12315200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:12312800-12315200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:12313000-12314600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:12313000-12315000	Enhancers	Placenta	Placenta
5	chr6:12313000-12315200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:12313200-12315200	Enhancers	HSMMtube	muscle
7	chr6:12313200-12315600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:12313600-12314800	Enhancers	Stomach Mucosa	stomach
9	chr6:12313600-12315000	Flanking Active TSS	NHEK	skin
10	chr6:12313800-12315000	Flanking Active TSS	HUVEC	blood vessel
11	chr6:12314000-12314800	Flanking Active TSS	Osteobl	bone
12	chr6:12314000-12315200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:12314000-12315200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:12314200-12314600	Flanking Active TSS	NHDF-Ad	bronchial
15	chr6:12314200-12314800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr6:12314200-12315200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:12314200-12315200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:12314200-12315200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:12314200-12315200	Enhancers	Esophagus	oesophagus
20	chr6:12314200-12315200	Enhancers	Pancreas	Pancrea
21	chr6:12314200-12315200	Enhancers	HSMM	muscle
22	chr6:12314400-12314600	Flanking Active TSS	A549	lung
23	chr6:12314400-12314800	Enhancers	Duodenum Mucosa	Duodenum
24	chr6:12314400-12314800	Enhancers	Spleen	Spleen
25	chr6:12314400-12315000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:12314400-12315000	Enhancers	Left Ventricle	heart
27	chr6:12314400-12315000	Flanking Active TSS	Hela-S3	cervix
28	chr6:12314400-12315000	Flanking Active TSS	HMEC	breast
29	chr6:12314400-12315200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:12314400-12315200	Enhancers	Aorta	Aorta
31	chr6:12314400-12315200	Enhancers	Lung	lung
32	chr6:12314400-12315200	Enhancers	NH-A	brain
33	chr6:12314400-12315600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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