Variant report

Variant	rs73380890
Chromosome Location	chr10:118532554-118532555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118525931..118528027-chr10:118530017..118532630,2	MCF-7	breast:
2	chr10:118500641..118503896-chr10:118531153..118536139,7	MCF-7	breast:
3	chr10:118450820..118452571-chr10:118529980..118532635,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165868	Chromatin interaction

rs_ID	r²[population]
rs17095413	1.00[AMR][1000 genomes]
rs17095457	1.00[AMR][1000 genomes]
rs17095484	1.00[AMR][1000 genomes]
rs60004142	1.00[AMR][1000 genomes]
rs60162197	1.00[AMR][1000 genomes]
rs74159006	1.00[AMR][1000 genomes]
rs74159012	1.00[AMR][1000 genomes]
rs74159013	1.00[AMR][1000 genomes]
rs74159016	1.00[AMR][1000 genomes]
rs74159019	1.00[AMR][1000 genomes]
rs74161330	1.00[AMR][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118525600-118533000	Weak transcription	Esophagus	oesophagus
2	chr10:118526000-118535000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:118527000-118534400	Weak transcription	Right Atrium	heart
4	chr10:118527200-118534200	Weak transcription	Colonic Mucosa	Colon
5	chr10:118527200-118542400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:118527400-118534200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:118527600-118534200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:118528400-118533400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:118530200-118533400	Enhancers	Placenta	Placenta
10	chr10:118531000-118534400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:118531400-118534200	Weak transcription	Left Ventricle	heart
12	chr10:118531400-118547200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:118531600-118532600	Weak transcription	Ovary	ovary
14	chr10:118531600-118533000	Weak transcription	Lung	lung
15	chr10:118531600-118542400	Weak transcription	HSMMtube	muscle
16	chr10:118531800-118533400	Enhancers	HepG2	liver
17	chr10:118531800-118534000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:118531800-118534000	Weak transcription	HMEC	breast
19	chr10:118531800-118534000	Weak transcription	NHEK	skin
20	chr10:118531800-118534200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:118531800-118534200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:118531800-118534200	Weak transcription	Adipose Nuclei	Adipose
23	chr10:118531800-118534200	Weak transcription	A549	lung
24	chr10:118532000-118533000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:118532000-118534000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:118532000-118534200	Weak transcription	Spleen	Spleen
27	chr10:118532200-118533800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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