Variant report

Variant	rs60162197
Chromosome Location	chr10:118646856-118646857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:118641858..118644146-chr10:118645128..118648052,2	MCF-7	breast:
2	chr10:118633027..118635693-chr10:118646428..118648751,2	MCF-7	breast:
3	chr10:118646049..118649271-chr10:118762894..118765234,3	MCF-7	breast:
4	chr10:118617053..118619205-chr10:118645139..118647080,2	K562	blood:
5	chr10:118640643..118643048-chr10:118646002..118648138,2	MCF-7	breast:
6	chr10:118637996..118640960-chr10:118646617..118648984,2	K562	blood:
7	chr10:118646540..118648646-chr10:118655970..118657486,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000188316	Chromatin interaction
ENSG00000187164	Chromatin interaction

rs_ID	r²[population]
rs10749230	1.00[EUR][1000 genomes]
rs10787731	1.00[EUR][1000 genomes]
rs11812450	1.00[EUR][1000 genomes]
rs11814798	1.00[EUR][1000 genomes]
rs11819524	1.00[EUR][1000 genomes]
rs17095392	1.00[EUR][1000 genomes]
rs17095395	1.00[EUR][1000 genomes]
rs17095404	1.00[EUR][1000 genomes]
rs17095413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17095418	1.00[EUR][1000 genomes]
rs17095442	1.00[EUR][1000 genomes]
rs17095444	1.00[EUR][1000 genomes]
rs17095447	1.00[EUR][1000 genomes]
rs17095457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095461	1.00[EUR][1000 genomes]
rs17095484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095519	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17095827	1.00[EUR][1000 genomes]
rs1898345	1.00[EUR][1000 genomes]
rs1905540	1.00[EUR][1000 genomes]
rs1905547	1.00[EUR][1000 genomes]
rs2164656	1.00[EUR][1000 genomes]
rs2901108	1.00[EUR][1000 genomes]
rs4354623	1.00[EUR][1000 genomes]
rs4360618	1.00[EUR][1000 genomes]
rs4752023	1.00[EUR][1000 genomes]
rs56000111	1.00[EUR][1000 genomes]
rs56004012	1.00[EUR][1000 genomes]
rs56916100	1.00[EUR][1000 genomes]
rs58852191	1.00[EUR][1000 genomes]
rs58947347	1.00[EUR][1000 genomes]
rs59036131	1.00[EUR][1000 genomes]
rs60004142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60882013	1.00[EUR][1000 genomes]
rs61652738	1.00[EUR][1000 genomes]
rs6585423	1.00[EUR][1000 genomes]
rs7074928	1.00[EUR][1000 genomes]
rs7076347	1.00[EUR][1000 genomes]
rs7090958	1.00[EUR][1000 genomes]
rs7101129	1.00[EUR][1000 genomes]
rs7101193	1.00[EUR][1000 genomes]
rs73380890	1.00[AMR][1000 genomes]
rs74159004	1.00[EUR][1000 genomes]
rs74159005	1.00[EUR][1000 genomes]
rs74159006	1.00[AMR][1000 genomes]
rs74159007	1.00[EUR][1000 genomes]
rs74159008	1.00[EUR][1000 genomes]
rs74159009	1.00[EUR][1000 genomes]
rs74159010	1.00[EUR][1000 genomes]
rs74159012	1.00[AMR][1000 genomes]
rs74159013	1.00[AMR][1000 genomes]
rs74159014	1.00[EUR][1000 genomes]
rs74159015	1.00[EUR][1000 genomes]
rs74159016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159017	1.00[EUR][1000 genomes]
rs74159018	1.00[EUR][1000 genomes]
rs74159019	1.00[AMR][1000 genomes]
rs74159020	1.00[EUR][1000 genomes]
rs74159021	1.00[EUR][1000 genomes]
rs74159038	1.00[AMR][1000 genomes]
rs74159040	1.00[AMR][1000 genomes]
rs74161330	1.00[AMR][1000 genomes]
rs74161333	1.00[EUR][1000 genomes]
rs74161334	1.00[EUR][1000 genomes]
rs74161335	1.00[EUR][1000 genomes]
rs7895011	1.00[EUR][1000 genomes]
rs7903949	1.00[EUR][1000 genomes]
rs9664187	1.00[EUR][1000 genomes]

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118636600-118647800	Weak transcription	Liver	Liver
2	chr10:118637200-118648400	Weak transcription	Brain Substantia Nigra	brain
3	chr10:118637200-118658800	Weak transcription	Pancreas	Pancrea
4	chr10:118637600-118670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:118637800-118648400	Weak transcription	Brain Angular Gyrus	brain
6	chr10:118638600-118648400	Weak transcription	Fetal Intestine Large	intestine
7	chr10:118639000-118666600	Weak transcription	Fetal Intestine Small	intestine
8	chr10:118639600-118648000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:118640400-118647800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:118640400-118649600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr10:118640600-118647800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:118640800-118647600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:118640800-118647600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:118640800-118651600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:118641000-118647200	Weak transcription	HSMM	muscle
16	chr10:118641000-118647600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:118641000-118650600	Weak transcription	Adipose Nuclei	Adipose
18	chr10:118641400-118648000	Weak transcription	Lung	lung
19	chr10:118641800-118647600	Weak transcription	NH-A	brain
20	chr10:118641800-118648000	Weak transcription	Esophagus	oesophagus
21	chr10:118641800-118648000	Weak transcription	Stomach Mucosa	stomach
22	chr10:118641800-118658800	Weak transcription	K562	blood
23	chr10:118641800-118665200	Weak transcription	HepG2	liver
24	chr10:118641800-118665400	Weak transcription	Fetal Brain Female	brain
25	chr10:118642200-118647000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:118642200-118649200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:118642400-118647800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:118642600-118652800	Weak transcription	Fetal Brain Male	brain
29	chr10:118642600-118670400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:118643000-118647200	Strong transcription	A549	lung
31	chr10:118643000-118650200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr10:118643400-118650800	Weak transcription	Aorta	Aorta
33	chr10:118643600-118649800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:118643800-118651000	Weak transcription	Brain Anterior Caudate	brain
35	chr10:118644000-118647800	Weak transcription	HUVEC	blood vessel
36	chr10:118645200-118648600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:118645400-118649000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:118645400-118673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:118645600-118648600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:118645800-118647000	Enhancers	H1 Cell Line	embryonic stem cell
41	chr10:118645800-118647000	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr10:118645800-118647200	Weak transcription	NHEK	skin
43	chr10:118645800-118647400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:118645800-118648200	Enhancers	HSMMtube	muscle
45	chr10:118645800-118649000	Enhancers	Fetal Muscle Leg	muscle
46	chr10:118646000-118647000	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:118646000-118647400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:118646200-118647400	Weak transcription	Hela-S3	cervix
49	chr10:118646200-118647600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:118646400-118647000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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