Variant report

Variant	rs4360618
Chromosome Location	chr10:118686760-118686761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10749230	1.00[EUR][1000 genomes]
rs10787731	1.00[EUR][1000 genomes]
rs11812450	0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814798	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819524	1.00[EUR][1000 genomes]
rs17095392	0.90[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095395	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095404	0.91[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095418	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095442	1.00[EUR][1000 genomes]
rs17095444	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095447	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095457	1.00[EUR][1000 genomes]
rs17095461	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095484	1.00[EUR][1000 genomes]
rs17095519	1.00[EUR][1000 genomes]
rs17095827	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1898345	1.00[EUR][1000 genomes]
rs1905540	1.00[EUR][1000 genomes]
rs1905547	1.00[EUR][1000 genomes]
rs2164656	1.00[EUR][1000 genomes]
rs2901108	1.00[EUR][1000 genomes]
rs4354623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4752023	1.00[EUR][1000 genomes]
rs56000111	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56004012	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56916100	1.00[EUR][1000 genomes]
rs58179258	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58852191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58947347	1.00[EUR][1000 genomes]
rs59036131	1.00[EUR][1000 genomes]
rs60004142	1.00[EUR][1000 genomes]
rs60162197	1.00[EUR][1000 genomes]
rs60882013	1.00[EUR][1000 genomes]
rs61652738	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6585423	1.00[EUR][1000 genomes]
rs7074928	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7076347	0.95[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7090958	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101129	1.00[EUR][1000 genomes]
rs7101193	0.86[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159004	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159005	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159007	1.00[EUR][1000 genomes]
rs74159008	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159009	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159015	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159016	1.00[EUR][1000 genomes]
rs74159017	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159018	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159020	1.00[EUR][1000 genomes]
rs74159021	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161333	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161334	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161335	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7895011	1.00[EUR][1000 genomes]
rs7903949	1.00[EUR][1000 genomes]
rs9664187	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
3	chr10:118651800-118689800	Weak transcription	HSMM	muscle
4	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:118654400-118692200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:118655000-118692400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:118659200-118697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:118659200-118697800	Weak transcription	Fetal Stomach	stomach
12	chr10:118660400-118688200	Weak transcription	Fetal Kidney	kidney
13	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:118664600-118690600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr10:118664600-118693200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:118667200-118698800	Weak transcription	Placenta	Placenta
17	chr10:118667400-118703200	Weak transcription	Aorta	Aorta
18	chr10:118671000-118702800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:118672000-118687200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:118672000-118698000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:118673000-118698600	Weak transcription	Gastric	stomach
22	chr10:118673000-118706400	Weak transcription	NH-A	brain
23	chr10:118673600-118691400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:118673800-118706400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:118674000-118687000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:118674200-118691600	Weak transcription	Lung	lung
27	chr10:118674200-118697800	Weak transcription	Fetal Intestine Small	intestine
28	chr10:118674400-118694400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr10:118675000-118706600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:118678000-118706600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:118679800-118698600	Weak transcription	Adipose Nuclei	Adipose
32	chr10:118680000-118691600	Weak transcription	Pancreas	Pancrea
33	chr10:118680000-118698000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:118680000-118699000	Weak transcription	K562	blood
35	chr10:118680000-118706800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr10:118680400-118698400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:118680400-118698800	Weak transcription	NHEK	skin
38	chr10:118680800-118687400	Weak transcription	HepG2	liver
39	chr10:118680800-118698200	Weak transcription	Ovary	ovary
40	chr10:118680800-118703200	Weak transcription	HMEC	breast
41	chr10:118681000-118686800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:118681000-118687000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:118681000-118687200	Weak transcription	Brain Substantia Nigra	brain
44	chr10:118681000-118687200	Weak transcription	A549	lung
45	chr10:118681000-118689800	Weak transcription	Brain Anterior Caudate	brain
46	chr10:118681000-118691600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:118681000-118691600	Weak transcription	Brain Germinal Matrix	brain
48	chr10:118681000-118691600	Weak transcription	Fetal Brain Female	brain
49	chr10:118681000-118698000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:118681000-118698600	Weak transcription	Duodenum Mucosa	Duodenum

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