Variant report

Variant	rs11812450
Chromosome Location	chr10:118650545-118650546
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118647239..118651488-chr10:118651970..118654207,4	MCF-7	breast:
2	chr10:118637537..118640975-chr10:118647484..118651676,4	K562	blood:
3	chr10:118607571..118610860-chr10:118647249..118651335,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225302	Chromatin interaction
ENSG00000188316	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10749230	1.00[EUR][1000 genomes]
rs10787731	1.00[EUR][1000 genomes]
rs11814798	1.00[EUR][1000 genomes]
rs11819524	1.00[EUR][1000 genomes]
rs17095392	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095395	0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095404	0.82[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095418	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095442	1.00[EUR][1000 genomes]
rs17095444	0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095447	0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095457	1.00[EUR][1000 genomes]
rs17095461	1.00[EUR][1000 genomes]
rs17095484	1.00[EUR][1000 genomes]
rs17095519	1.00[EUR][1000 genomes]
rs17095827	1.00[EUR][1000 genomes]
rs1898345	1.00[EUR][1000 genomes]
rs1905540	1.00[EUR][1000 genomes]
rs1905547	1.00[EUR][1000 genomes]
rs2164656	1.00[EUR][1000 genomes]
rs2901108	1.00[EUR][1000 genomes]
rs4354623	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4360618	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4752023	1.00[EUR][1000 genomes]
rs56000111	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56004012	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56916100	1.00[EUR][1000 genomes]
rs58179258	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58852191	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58947347	1.00[EUR][1000 genomes]
rs59036131	1.00[EUR][1000 genomes]
rs60004142	1.00[EUR][1000 genomes]
rs60162197	1.00[EUR][1000 genomes]
rs60882013	1.00[EUR][1000 genomes]
rs61652738	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6585423	1.00[EUR][1000 genomes]
rs7074928	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7076347	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs7090958	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101129	1.00[EUR][1000 genomes]
rs7101193	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs74159004	1.00[EUR][1000 genomes]
rs74159005	1.00[EUR][1000 genomes]
rs74159007	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159008	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159009	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159010	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159014	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159015	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159016	1.00[EUR][1000 genomes]
rs74159017	1.00[EUR][1000 genomes]
rs74159018	1.00[EUR][1000 genomes]
rs74159020	1.00[EUR][1000 genomes]
rs74159021	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161333	1.00[EUR][1000 genomes]
rs74161334	1.00[EUR][1000 genomes]
rs74161335	1.00[EUR][1000 genomes]
rs7895011	1.00[EUR][1000 genomes]
rs7903949	1.00[EUR][1000 genomes]
rs9664187	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118637200-118658800	Weak transcription	Pancreas	Pancrea
2	chr10:118637600-118670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:118639000-118666600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:118640800-118651600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:118641000-118650600	Weak transcription	Adipose Nuclei	Adipose
6	chr10:118641800-118658800	Weak transcription	K562	blood
7	chr10:118641800-118665200	Weak transcription	HepG2	liver
8	chr10:118641800-118665400	Weak transcription	Fetal Brain Female	brain
9	chr10:118642600-118652800	Weak transcription	Fetal Brain Male	brain
10	chr10:118642600-118670400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:118643400-118650800	Weak transcription	Aorta	Aorta
12	chr10:118643800-118651000	Weak transcription	Brain Anterior Caudate	brain
13	chr10:118645400-118673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:118646400-118652400	Weak transcription	Fetal Kidney	kidney
15	chr10:118646800-118652800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:118647200-118650600	Enhancers	HSMM	muscle
17	chr10:118647200-118651000	Weak transcription	Brain Germinal Matrix	brain
18	chr10:118647200-118652800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:118647400-118680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:118648200-118652800	Weak transcription	Gastric	stomach
21	chr10:118648600-118650600	Enhancers	HMEC	breast
22	chr10:118648600-118652600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr10:118648600-118652600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:118648800-118651600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:118648800-118652400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:118648800-118652600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:118648800-118652800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:118648800-118659000	Weak transcription	Fetal Intestine Large	intestine
29	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:118649000-118650600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:118649000-118652400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:118649000-118652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:118649200-118651600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:118649200-118652600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:118649200-118652600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:118649200-118652800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:118649200-118658800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:118649200-118658800	Weak transcription	Liver	Liver
39	chr10:118649200-118670400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:118649200-118681200	Weak transcription	Stomach Mucosa	stomach
41	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
42	chr10:118649400-118651000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:118649400-118658600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:118649400-118665000	Weak transcription	NHEK	skin
45	chr10:118649400-118665200	Weak transcription	Hela-S3	cervix
46	chr10:118649600-118651200	Enhancers	Fetal Muscle Leg	muscle
47	chr10:118649600-118652600	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr10:118649600-118652800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:118649600-118655800	Weak transcription	A549	lung
50	chr10:118649800-118650800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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