Variant report

Variant	rs17095444
Chromosome Location	chr10:118703836-118703837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118702160..118704504-chr10:118763132..118765142,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10749230	1.00[EUR][1000 genomes]
rs10787731	1.00[EUR][1000 genomes]
rs11812450	0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814798	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819524	1.00[EUR][1000 genomes]
rs17095392	1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095395	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095404	0.89[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095418	1.00[MEX][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095442	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17095447	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095457	1.00[EUR][1000 genomes]
rs17095461	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095484	1.00[EUR][1000 genomes]
rs17095519	1.00[EUR][1000 genomes]
rs17095827	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1898345	1.00[EUR][1000 genomes]
rs1905540	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs1905547	1.00[EUR][1000 genomes]
rs2164656	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs2901108	1.00[EUR][1000 genomes]
rs4354623	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4360618	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4752023	1.00[EUR][1000 genomes]
rs56000111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56004012	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56916100	1.00[EUR][1000 genomes]
rs58179258	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58852191	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58947347	1.00[EUR][1000 genomes]
rs59036131	1.00[EUR][1000 genomes]
rs60004142	1.00[EUR][1000 genomes]
rs60162197	1.00[EUR][1000 genomes]
rs60882013	1.00[EUR][1000 genomes]
rs61652738	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6585423	1.00[EUR][1000 genomes]
rs7074928	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7076347	0.95[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7090958	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101129	1.00[EUR][1000 genomes]
rs7101193	1.00[ASW][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159004	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159005	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159007	1.00[EUR][1000 genomes]
rs74159008	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159010	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159014	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159015	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159016	1.00[EUR][1000 genomes]
rs74159017	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159018	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159020	1.00[EUR][1000 genomes]
rs74159021	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161333	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161334	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161335	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7895011	1.00[EUR][1000 genomes]
rs7903949	1.00[EUR][1000 genomes]
rs9664187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:118673000-118706400	Weak transcription	NH-A	brain
7	chr10:118673800-118706400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:118675000-118706600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:118678000-118706600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:118680000-118706800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:118687200-118706600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:118690200-118706400	Weak transcription	HSMM	muscle
13	chr10:118694800-118706600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:118695800-118706400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:118697200-118706600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:118697600-118705600	Strong transcription	A549	lung
17	chr10:118697600-118707000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:118697800-118705400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr10:118697800-118706600	Weak transcription	HSMMtube	muscle
20	chr10:118698000-118706400	Weak transcription	NHDF-Ad	bronchial
21	chr10:118698200-118706600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:118699000-118706200	Weak transcription	Lung	lung
23	chr10:118699000-118706800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:118699000-118707600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:118699200-118704000	Weak transcription	Fetal Stomach	stomach
26	chr10:118699200-118705400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr10:118699200-118707000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:118699200-118709800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:118699200-118710400	Weak transcription	Pancreas	Pancrea
30	chr10:118699200-118712400	Weak transcription	Esophagus	oesophagus
31	chr10:118699200-118724200	Weak transcription	Fetal Intestine Small	intestine
32	chr10:118699200-118740600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:118699200-118748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:118700000-118710400	Weak transcription	Adipose Nuclei	Adipose
35	chr10:118700000-118736800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:118700200-118706600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:118700200-118706800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:118700200-118712400	Weak transcription	Placenta	Placenta
39	chr10:118701000-118733400	Weak transcription	Fetal Kidney	kidney
40	chr10:118701400-118704200	Strong transcription	Ovary	ovary
41	chr10:118701400-118705600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:118702000-118704800	Strong transcription	Liver	Liver
43	chr10:118702200-118704200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:118702400-118704400	Strong transcription	Brain Germinal Matrix	brain
45	chr10:118702400-118705200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:118702400-118705400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:118702400-118727200	Weak transcription	Stomach Mucosa	stomach
48	chr10:118702600-118704000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:118702600-118704200	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr10:118702600-118704800	Strong transcription	Fetal Intestine Large	intestine

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