Variant report

Variant	rs58852191
Chromosome Location	chr10:118682338-118682339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10749230	1.00[EUR][1000 genomes]
rs10787731	1.00[EUR][1000 genomes]
rs11812450	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814798	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819524	1.00[EUR][1000 genomes]
rs17095392	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095395	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095404	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095418	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095442	1.00[EUR][1000 genomes]
rs17095444	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095447	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095457	1.00[EUR][1000 genomes]
rs17095461	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095484	1.00[EUR][1000 genomes]
rs17095519	1.00[EUR][1000 genomes]
rs17095827	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1898345	1.00[EUR][1000 genomes]
rs1905540	1.00[EUR][1000 genomes]
rs1905547	1.00[EUR][1000 genomes]
rs2164656	1.00[EUR][1000 genomes]
rs2901108	1.00[EUR][1000 genomes]
rs4354623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4360618	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4752023	1.00[EUR][1000 genomes]
rs56000111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56004012	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56916100	1.00[EUR][1000 genomes]
rs58179258	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58947347	1.00[EUR][1000 genomes]
rs59036131	1.00[EUR][1000 genomes]
rs60004142	1.00[EUR][1000 genomes]
rs60162197	1.00[EUR][1000 genomes]
rs60882013	1.00[EUR][1000 genomes]
rs61652738	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6585423	1.00[EUR][1000 genomes]
rs7074928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7076347	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7090958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101129	1.00[EUR][1000 genomes]
rs7101193	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159004	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159005	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159007	1.00[EUR][1000 genomes]
rs74159008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159015	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159016	1.00[EUR][1000 genomes]
rs74159017	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159018	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159020	1.00[EUR][1000 genomes]
rs74159021	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161333	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161334	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161335	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7895011	1.00[EUR][1000 genomes]
rs7903949	1.00[EUR][1000 genomes]
rs9664187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
3	chr10:118651800-118689800	Weak transcription	HSMM	muscle
4	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:118653200-118684600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:118654400-118692200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:118655000-118692400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr10:118659200-118697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:118659200-118697800	Weak transcription	Fetal Stomach	stomach
13	chr10:118660400-118688200	Weak transcription	Fetal Kidney	kidney
14	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:118664000-118684800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:118664600-118690600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:118664600-118693200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:118665000-118682600	Weak transcription	Colonic Mucosa	Colon
19	chr10:118666600-118686400	Weak transcription	HUVEC	blood vessel
20	chr10:118667200-118698800	Weak transcription	Placenta	Placenta
21	chr10:118667400-118703200	Weak transcription	Aorta	Aorta
22	chr10:118671000-118702800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:118671200-118684800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:118671200-118685000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:118672000-118687200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:118672000-118698000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:118673000-118698600	Weak transcription	Gastric	stomach
28	chr10:118673000-118706400	Weak transcription	NH-A	brain
29	chr10:118673600-118691400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:118673800-118706400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:118674000-118687000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:118674200-118691600	Weak transcription	Lung	lung
33	chr10:118674200-118697800	Weak transcription	Fetal Intestine Small	intestine
34	chr10:118674400-118694400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr10:118675000-118706600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:118677800-118684800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:118677800-118686000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr10:118678000-118706600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr10:118679800-118684400	Weak transcription	Fetal Brain Male	brain
40	chr10:118679800-118698600	Weak transcription	Adipose Nuclei	Adipose
41	chr10:118680000-118691600	Weak transcription	Pancreas	Pancrea
42	chr10:118680000-118698000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:118680000-118699000	Weak transcription	K562	blood
44	chr10:118680000-118706800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr10:118680400-118698400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:118680400-118698800	Weak transcription	NHEK	skin
47	chr10:118680800-118684600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:118680800-118686200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:118680800-118687400	Weak transcription	HepG2	liver
50	chr10:118680800-118698200	Weak transcription	Ovary	ovary

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