Variant report

Variant	rs56916100
Chromosome Location	chr10:118752557-118752558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118746402..118749299-chr10:118752056..118754403,2	MCF-7	breast:
2	chr10:118747095..118751622-chr10:118752184..118758339,7	K562	blood:
3	chr10:118752140..118753720-chr10:118755796..118757523,2	K562	blood:
4	chr10:118750376..118752859-chr10:118763858..118766057,2	K562	blood:
5	chr10:118733918..118736031-chr10:118751270..118753941,2	MCF-7	breast:
6	chr10:118749248..118750819-chr10:118752042..118753828,2	K562	blood:

Variant related genes	Relation type
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10749230	1.00[EUR][1000 genomes]
rs10787731	1.00[EUR][1000 genomes]
rs11812450	1.00[EUR][1000 genomes]
rs11814798	1.00[EUR][1000 genomes]
rs11819524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095392	1.00[EUR][1000 genomes]
rs17095395	1.00[EUR][1000 genomes]
rs17095404	1.00[EUR][1000 genomes]
rs17095418	1.00[EUR][1000 genomes]
rs17095442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095444	1.00[EUR][1000 genomes]
rs17095447	1.00[EUR][1000 genomes]
rs17095457	1.00[EUR][1000 genomes]
rs17095461	1.00[EUR][1000 genomes]
rs17095484	1.00[EUR][1000 genomes]
rs17095519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095827	1.00[EUR][1000 genomes]
rs1898345	1.00[EUR][1000 genomes]
rs1905540	1.00[EUR][1000 genomes]
rs1905547	1.00[EUR][1000 genomes]
rs2164656	1.00[EUR][1000 genomes]
rs2901108	1.00[EUR][1000 genomes]
rs4354623	1.00[EUR][1000 genomes]
rs4360618	1.00[EUR][1000 genomes]
rs4752023	1.00[EUR][1000 genomes]
rs56000111	1.00[EUR][1000 genomes]
rs56004012	1.00[EUR][1000 genomes]
rs58852191	1.00[EUR][1000 genomes]
rs58947347	1.00[EUR][1000 genomes]
rs59036131	1.00[EUR][1000 genomes]
rs60004142	1.00[EUR][1000 genomes]
rs60162197	1.00[EUR][1000 genomes]
rs60882013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61652738	1.00[EUR][1000 genomes]
rs6585423	1.00[EUR][1000 genomes]
rs7074928	1.00[EUR][1000 genomes]
rs7076347	1.00[EUR][1000 genomes]
rs7090958	1.00[EUR][1000 genomes]
rs7101129	1.00[EUR][1000 genomes]
rs7101193	1.00[EUR][1000 genomes]
rs74159004	1.00[EUR][1000 genomes]
rs74159005	1.00[EUR][1000 genomes]
rs74159007	1.00[EUR][1000 genomes]
rs74159008	1.00[EUR][1000 genomes]
rs74159009	1.00[EUR][1000 genomes]
rs74159010	1.00[EUR][1000 genomes]
rs74159014	1.00[EUR][1000 genomes]
rs74159015	1.00[EUR][1000 genomes]
rs74159016	1.00[EUR][1000 genomes]
rs74159017	1.00[EUR][1000 genomes]
rs74159018	1.00[EUR][1000 genomes]
rs74159020	1.00[EUR][1000 genomes]
rs74159021	1.00[EUR][1000 genomes]
rs74161333	1.00[EUR][1000 genomes]
rs74161334	1.00[EUR][1000 genomes]
rs74161335	1.00[EUR][1000 genomes]
rs7895011	1.00[EUR][1000 genomes]
rs7903949	1.00[EUR][1000 genomes]
rs9664187	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118721600-118764000	Weak transcription	Ovary	ovary
2	chr10:118725200-118763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:118735000-118762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:118736400-118753000	Weak transcription	Liver	Liver
5	chr10:118737200-118762800	Weak transcription	NHEK	skin
6	chr10:118737400-118760200	Weak transcription	Pancreas	Pancrea
7	chr10:118738800-118762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:118741000-118756400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:118745000-118760400	Weak transcription	K562	blood
10	chr10:118747400-118763000	Weak transcription	HUVEC	blood vessel
11	chr10:118747600-118753000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:118748200-118752600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:118748200-118753600	Enhancers	Brain Substantia Nigra	brain
14	chr10:118748600-118752600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:118749600-118754000	Weak transcription	Fetal Intestine Large	intestine
16	chr10:118749800-118759600	Weak transcription	Brain Germinal Matrix	brain
17	chr10:118750000-118755200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:118750000-118756000	Weak transcription	HepG2	liver
19	chr10:118750200-118764000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:118751200-118756200	Weak transcription	A549	lung
21	chr10:118751200-118760200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr10:118751600-118755200	Weak transcription	Fetal Intestine Small	intestine
23	chr10:118751600-118758200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:118751600-118763800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:118751800-118760000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr10:118752200-118752800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:118752200-118753400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:118752200-118754000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:118752200-118755400	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:118752200-118757800	Weak transcription	Hela-S3	cervix
31	chr10:118752400-118754800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:118752400-118754800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:118752400-118755200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr10:118752400-118755200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:118752400-118755200	Weak transcription	Brain Angular Gyrus	brain
36	chr10:118752400-118755200	Weak transcription	Brain Anterior Caudate	brain
37	chr10:118752400-118763600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:118752400-118764000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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