Variant report

Variant	rs56004012
Chromosome Location	chr10:118652339-118652340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118647239..118651488-chr10:118651970..118654207,4	MCF-7	breast:
2	chr10:118639191..118641334-chr10:118651330..118653602,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10749230	1.00[EUR][1000 genomes]
rs10787731	1.00[EUR][1000 genomes]
rs11812450	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814798	1.00[EUR][1000 genomes]
rs11819524	1.00[EUR][1000 genomes]
rs17095392	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095395	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095404	1.00[EUR][1000 genomes]
rs17095418	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095442	1.00[EUR][1000 genomes]
rs17095444	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17095447	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17095457	1.00[EUR][1000 genomes]
rs17095461	1.00[EUR][1000 genomes]
rs17095484	1.00[EUR][1000 genomes]
rs17095519	1.00[EUR][1000 genomes]
rs17095827	1.00[EUR][1000 genomes]
rs1898345	1.00[EUR][1000 genomes]
rs1905540	1.00[EUR][1000 genomes]
rs1905547	1.00[EUR][1000 genomes]
rs2164656	1.00[EUR][1000 genomes]
rs2901108	1.00[EUR][1000 genomes]
rs4354623	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4360618	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4752023	1.00[EUR][1000 genomes]
rs56000111	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56916100	1.00[EUR][1000 genomes]
rs58179258	0.83[AFR][1000 genomes]
rs58852191	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58947347	1.00[EUR][1000 genomes]
rs59036131	1.00[EUR][1000 genomes]
rs60004142	1.00[EUR][1000 genomes]
rs60162197	1.00[EUR][1000 genomes]
rs60882013	1.00[EUR][1000 genomes]
rs61652738	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6585423	1.00[EUR][1000 genomes]
rs7074928	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7076347	1.00[EUR][1000 genomes]
rs7090958	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7101129	1.00[EUR][1000 genomes]
rs7101193	1.00[EUR][1000 genomes]
rs74159004	1.00[EUR][1000 genomes]
rs74159005	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159007	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159008	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159009	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159010	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159014	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159015	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159016	1.00[EUR][1000 genomes]
rs74159017	1.00[EUR][1000 genomes]
rs74159018	1.00[EUR][1000 genomes]
rs74159020	1.00[EUR][1000 genomes]
rs74159021	1.00[EUR][1000 genomes]
rs74161333	1.00[EUR][1000 genomes]
rs74161334	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74161335	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7895011	1.00[EUR][1000 genomes]
rs7903949	1.00[EUR][1000 genomes]
rs9664187	1.00[EUR][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118637200-118658800	Weak transcription	Pancreas	Pancrea
2	chr10:118637600-118670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:118639000-118666600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:118641800-118658800	Weak transcription	K562	blood
5	chr10:118641800-118665200	Weak transcription	HepG2	liver
6	chr10:118641800-118665400	Weak transcription	Fetal Brain Female	brain
7	chr10:118642600-118652800	Weak transcription	Fetal Brain Male	brain
8	chr10:118642600-118670400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:118645400-118673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:118646400-118652400	Weak transcription	Fetal Kidney	kidney
11	chr10:118646800-118652800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:118647200-118652800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:118647400-118680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:118648200-118652800	Weak transcription	Gastric	stomach
15	chr10:118648600-118652600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:118648600-118652600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:118648800-118652400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:118648800-118652600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:118648800-118652800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:118648800-118659000	Weak transcription	Fetal Intestine Large	intestine
21	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:118649000-118652400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:118649000-118652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr10:118649200-118652600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:118649200-118652600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:118649200-118652800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:118649200-118658800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:118649200-118658800	Weak transcription	Liver	Liver
29	chr10:118649200-118670400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:118649200-118681200	Weak transcription	Stomach Mucosa	stomach
31	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
32	chr10:118649400-118658600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:118649400-118665000	Weak transcription	NHEK	skin
34	chr10:118649400-118665200	Weak transcription	Hela-S3	cervix
35	chr10:118649600-118652600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr10:118649600-118652800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:118649600-118655800	Weak transcription	A549	lung
38	chr10:118650000-118653400	Enhancers	Brain Hippocampus Middle	brain
39	chr10:118650200-118652600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:118650200-118653800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr10:118650200-118654000	Enhancers	Brain Cingulate Gyrus	brain
42	chr10:118650200-118656600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr10:118650400-118653400	Enhancers	HUVEC	blood vessel
44	chr10:118650400-118658800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:118650600-118659600	Weak transcription	HMEC	breast
46	chr10:118650800-118652600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:118650800-118652600	Weak transcription	Fetal Stomach	stomach
48	chr10:118651200-118652600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:118651200-118653400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:118651200-118654000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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