Variant report

Variant	rs2164656
Chromosome Location	chr10:118736080-118736081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118735546..118737838-chr10:118739779..118741710,2	MCF-7	breast:
2	chr10:118734513..118736119-chr10:118738818..118741061,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10749230	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10787731	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11812450	1.00[EUR][1000 genomes]
rs11814798	1.00[EUR][1000 genomes]
rs11819524	1.00[EUR][1000 genomes]
rs17095392	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs17095395	1.00[EUR][1000 genomes]
rs17095404	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs17095418	1.00[EUR][1000 genomes]
rs17095442	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs17095444	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs17095447	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs17095457	1.00[EUR][1000 genomes]
rs17095461	1.00[EUR][1000 genomes]
rs17095484	1.00[EUR][1000 genomes]
rs17095519	1.00[EUR][1000 genomes]
rs17095827	1.00[EUR][1000 genomes]
rs1898345	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1905540	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1905547	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2901108	0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4354623	1.00[EUR][1000 genomes]
rs4360618	1.00[EUR][1000 genomes]
rs4752020	0.87[AFR][1000 genomes]
rs4752023	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56000111	1.00[EUR][1000 genomes]
rs56004012	1.00[EUR][1000 genomes]
rs56916100	1.00[EUR][1000 genomes]
rs58852191	1.00[EUR][1000 genomes]
rs58947347	1.00[EUR][1000 genomes]
rs59036131	1.00[EUR][1000 genomes]
rs60004142	1.00[EUR][1000 genomes]
rs60162197	1.00[EUR][1000 genomes]
rs60882013	1.00[EUR][1000 genomes]
rs61652738	1.00[EUR][1000 genomes]
rs6585423	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074928	1.00[EUR][1000 genomes]
rs7076347	1.00[EUR][1000 genomes]
rs7090958	1.00[EUR][1000 genomes]
rs7101129	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101193	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs74159004	1.00[EUR][1000 genomes]
rs74159005	1.00[EUR][1000 genomes]
rs74159007	1.00[EUR][1000 genomes]
rs74159008	1.00[EUR][1000 genomes]
rs74159009	1.00[EUR][1000 genomes]
rs74159010	1.00[EUR][1000 genomes]
rs74159014	1.00[EUR][1000 genomes]
rs74159015	1.00[EUR][1000 genomes]
rs74159016	1.00[EUR][1000 genomes]
rs74159017	1.00[EUR][1000 genomes]
rs74159018	1.00[EUR][1000 genomes]
rs74159020	1.00[EUR][1000 genomes]
rs74159021	1.00[EUR][1000 genomes]
rs74161333	1.00[EUR][1000 genomes]
rs74161334	1.00[EUR][1000 genomes]
rs74161335	1.00[EUR][1000 genomes]
rs7895011	1.00[EUR][1000 genomes]
rs7903949	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7906476	0.86[AFR][1000 genomes]
rs9664187	1.00[EUR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:118699200-118740600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:118699200-118748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:118700000-118736800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:118703400-118737000	Weak transcription	Aorta	Aorta
6	chr10:118703600-118740000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:118703600-118752200	Weak transcription	Gastric	stomach
8	chr10:118708200-118744000	Weak transcription	K562	blood
9	chr10:118708600-118736200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:118711000-118739600	Weak transcription	Fetal Stomach	stomach
11	chr10:118711200-118740000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:118721600-118764000	Weak transcription	Ovary	ovary
13	chr10:118723200-118740000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:118724000-118737800	Weak transcription	Lung	lung
15	chr10:118725200-118736800	Weak transcription	Fetal Intestine Large	intestine
16	chr10:118725200-118763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:118725600-118740600	Weak transcription	Fetal Intestine Small	intestine
18	chr10:118727600-118743400	Weak transcription	HepG2	liver
19	chr10:118730400-118736800	Enhancers	Brain Cingulate Gyrus	brain
20	chr10:118730400-118736800	Enhancers	Brain Hippocampus Middle	brain
21	chr10:118730600-118739800	Enhancers	Fetal Brain Male	brain
22	chr10:118731600-118736600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:118732000-118736400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr10:118732200-118736400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:118732200-118738400	Weak transcription	HSMMtube	muscle
26	chr10:118733000-118736200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:118733600-118738800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:118734200-118748200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:118734400-118736600	Enhancers	Fetal Brain Female	brain
30	chr10:118734400-118737000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:118734400-118744000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr10:118734600-118737000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:118734600-118737400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:118734600-118738200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:118734800-118738200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:118734800-118739200	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr10:118735000-118736600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:118735000-118737600	Weak transcription	NH-A	brain
39	chr10:118735000-118738000	Weak transcription	HSMM	muscle
40	chr10:118735000-118738200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:118735000-118738400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr10:118735000-118739600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:118735000-118743800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:118735000-118752000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr10:118735000-118762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:118735200-118736400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:118735200-118737200	Strong transcription	A549	lung
48	chr10:118735200-118738200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:118735200-118744800	Weak transcription	HUVEC	blood vessel
50	chr10:118735400-118736200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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