Variant report

Variant	rs74159018
Chromosome Location	chr10:118726419-118726420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10749230	1.00[EUR][1000 genomes]
rs10787731	1.00[EUR][1000 genomes]
rs11812450	1.00[EUR][1000 genomes]
rs11814798	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11819524	1.00[EUR][1000 genomes]
rs17095392	1.00[EUR][1000 genomes]
rs17095395	1.00[EUR][1000 genomes]
rs17095404	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095418	1.00[EUR][1000 genomes]
rs17095442	1.00[EUR][1000 genomes]
rs17095444	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095447	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095457	1.00[EUR][1000 genomes]
rs17095461	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17095484	1.00[EUR][1000 genomes]
rs17095519	1.00[EUR][1000 genomes]
rs17095827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1898345	1.00[EUR][1000 genomes]
rs1905540	1.00[EUR][1000 genomes]
rs1905547	1.00[EUR][1000 genomes]
rs2164656	1.00[EUR][1000 genomes]
rs2901108	1.00[EUR][1000 genomes]
rs4354623	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4360618	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4752023	1.00[EUR][1000 genomes]
rs56000111	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56004012	1.00[EUR][1000 genomes]
rs56916100	1.00[EUR][1000 genomes]
rs58179258	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58852191	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58947347	1.00[EUR][1000 genomes]
rs59036131	1.00[EUR][1000 genomes]
rs60004142	1.00[EUR][1000 genomes]
rs60162197	1.00[EUR][1000 genomes]
rs60882013	1.00[EUR][1000 genomes]
rs61652738	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6585423	1.00[EUR][1000 genomes]
rs7074928	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7076347	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7090958	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101129	1.00[EUR][1000 genomes]
rs7101193	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159004	1.00[EUR][1000 genomes]
rs74159005	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159007	1.00[EUR][1000 genomes]
rs74159008	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159009	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159010	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159014	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159015	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159016	1.00[EUR][1000 genomes]
rs74159017	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159020	1.00[EUR][1000 genomes]
rs74159021	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161333	1.00[EUR][1000 genomes]
rs74161334	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74161335	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7895011	1.00[EUR][1000 genomes]
rs7903949	1.00[EUR][1000 genomes]
rs9664187	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:118699200-118740600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:118699200-118748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:118700000-118736800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:118701000-118733400	Weak transcription	Fetal Kidney	kidney
6	chr10:118702400-118727200	Weak transcription	Stomach Mucosa	stomach
7	chr10:118703400-118737000	Weak transcription	Aorta	Aorta
8	chr10:118703600-118740000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:118703600-118752200	Weak transcription	Gastric	stomach
10	chr10:118704200-118726600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:118708000-118726600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:118708000-118735600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:118708200-118730800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:118708200-118733200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:118708200-118734000	Weak transcription	HSMM	muscle
16	chr10:118708200-118744000	Weak transcription	K562	blood
17	chr10:118708600-118736200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:118710800-118731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:118711000-118727000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:118711000-118735600	Weak transcription	Pancreas	Pancrea
21	chr10:118711000-118739600	Weak transcription	Fetal Stomach	stomach
22	chr10:118711200-118732600	Weak transcription	HUVEC	blood vessel
23	chr10:118711200-118740000	Weak transcription	Adipose Nuclei	Adipose
24	chr10:118711800-118732200	Weak transcription	Hela-S3	cervix
25	chr10:118713000-118732800	Weak transcription	HMEC	breast
26	chr10:118713600-118726600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:118713800-118732800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:118714400-118727800	Weak transcription	NHEK	skin
29	chr10:118721400-118728800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr10:118721400-118730800	Weak transcription	Brain Anterior Caudate	brain
31	chr10:118721400-118731800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:118721600-118764000	Weak transcription	Ovary	ovary
33	chr10:118722200-118727000	Weak transcription	Fetal Brain Female	brain
34	chr10:118722200-118727200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:118722400-118731600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:118723200-118728000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:118723200-118740000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:118723400-118728600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr10:118724000-118730600	Weak transcription	Fetal Brain Male	brain
40	chr10:118724000-118737800	Weak transcription	Lung	lung
41	chr10:118724200-118730400	Weak transcription	Brain Germinal Matrix	brain
42	chr10:118724400-118727600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:118724600-118727600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:118724600-118727600	Strong transcription	HepG2	liver
45	chr10:118724600-118728400	Strong transcription	Liver	Liver
46	chr10:118724800-118727200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:118725200-118736800	Weak transcription	Fetal Intestine Large	intestine
48	chr10:118725200-118763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:118725600-118740600	Weak transcription	Fetal Intestine Small	intestine
50	chr10:118725800-118727000	Enhancers	Brain Substantia Nigra	brain

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