Variant report
| Variant | rs74159021 |
|---|---|
| Chromosome Location | chr10:118766680-118766681 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:117)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| KIAA1598 | TF binding region |
| ENSG00000187164 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:60)
| rs_ID | r2[population] |
|---|---|
| rs10749230 | 1.00[EUR][1000 genomes] |
| rs10787731 | 1.00[EUR][1000 genomes] |
| rs11812450 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11814798 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11819524 | 1.00[EUR][1000 genomes] |
| rs17095392 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17095395 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17095404 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17095418 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17095442 | 1.00[EUR][1000 genomes] |
| rs17095444 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17095447 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17095457 | 1.00[EUR][1000 genomes] |
| rs17095461 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17095484 | 1.00[EUR][1000 genomes] |
| rs17095519 | 1.00[EUR][1000 genomes] |
| rs17095827 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1898345 | 1.00[EUR][1000 genomes] |
| rs1905540 | 1.00[EUR][1000 genomes] |
| rs1905547 | 1.00[EUR][1000 genomes] |
| rs2164656 | 1.00[EUR][1000 genomes] |
| rs2901108 | 1.00[EUR][1000 genomes] |
| rs4354623 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4360618 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4752023 | 1.00[EUR][1000 genomes] |
| rs56000111 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56004012 | 1.00[EUR][1000 genomes] |
| rs56916100 | 1.00[EUR][1000 genomes] |
| rs58179258 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58852191 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58947347 | 1.00[EUR][1000 genomes] |
| rs59036131 | 1.00[EUR][1000 genomes] |
| rs60004142 | 1.00[EUR][1000 genomes] |
| rs60162197 | 1.00[EUR][1000 genomes] |
| rs60882013 | 1.00[EUR][1000 genomes] |
| rs61652738 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6585423 | 1.00[EUR][1000 genomes] |
| rs7074928 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7076347 | 1.00[EUR][1000 genomes] |
| rs7090958 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7101129 | 1.00[EUR][1000 genomes] |
| rs7101193 | 0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74159004 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74159005 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74159007 | 1.00[EUR][1000 genomes] |
| rs74159008 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74159009 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74159010 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74159014 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74159015 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74159016 | 1.00[EUR][1000 genomes] |
| rs74159017 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74159018 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74159020 | 1.00[EUR][1000 genomes] |
| rs74161333 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74161334 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74161335 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7895011 | 1.00[EUR][1000 genomes] |
| rs7903949 | 1.00[EUR][1000 genomes] |
| rs9664187 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2755506 | chr10:118748764-118800107 | Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv3525989 | chr10:118764562-118770560 | Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | n/a |
| 3 | esv3525990 | chr10:118765187-118770410 | Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | n/a |
| 4 | esv3525991 | chr10:118765187-118770410 | Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | n/a |
| 5 | esv11358 | chr10:118766138-118768926 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 6 | nsv947704 | chr10:118766293-118767918 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:118765400-118766800 | Enhancers | Primary monocytes fromperipheralblood | blood |
| 2 | chr10:118765600-118766800 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 3 | chr10:118765600-118766800 | Enhancers | HUVEC | blood vessel |
| 4 | chr10:118765600-118767000 | Enhancers | Brain Substantia Nigra | brain |
| 5 | chr10:118765600-118767200 | Enhancers | Monocytes-CD14+_RO01746 | blood |
| 6 | chr10:118765800-118766800 | Enhancers | HepG2 | liver |
| 7 | chr10:118766200-118766800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 8 | chr10:118766200-118767200 | Flanking Active TSS | A549 | lung |
| 9 | chr10:118766400-118766800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
| 10 | chr10:118766600-118766800 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 11 | chr10:118766600-118767200 | Enhancers | K562 | blood |
| 12 | chr10:118766600-118768200 | Weak transcription | Brain Hippocampus Middle | brain |
