Variant report

Variant	rs58179258
Chromosome Location	chr10:118691701-118691702
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118682595..118684245-chr10:118691155..118694125,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11812450	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11814798	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17095392	0.83[AMR][1000 genomes]
rs17095395	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17095404	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17095418	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17095444	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17095447	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17095461	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17095827	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4354623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4360618	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56000111	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56004012	0.83[AFR][1000 genomes]
rs58852191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61652738	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7074928	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7076347	0.83[AFR][1000 genomes]
rs7090958	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7101193	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74159004	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74159005	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74159008	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159009	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159017	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74159018	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74159021	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74161333	0.85[AMR][1000 genomes]
rs74161334	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74161335	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9664187	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
3	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:118654400-118692200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:118655000-118692400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:118659200-118697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:118659200-118697800	Weak transcription	Fetal Stomach	stomach
11	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:118664600-118693200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:118667200-118698800	Weak transcription	Placenta	Placenta
14	chr10:118667400-118703200	Weak transcription	Aorta	Aorta
15	chr10:118671000-118702800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:118672000-118698000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:118673000-118698600	Weak transcription	Gastric	stomach
18	chr10:118673000-118706400	Weak transcription	NH-A	brain
19	chr10:118673800-118706400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:118674200-118697800	Weak transcription	Fetal Intestine Small	intestine
21	chr10:118674400-118694400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:118675000-118706600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:118678000-118706600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr10:118679800-118698600	Weak transcription	Adipose Nuclei	Adipose
25	chr10:118680000-118698000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:118680000-118699000	Weak transcription	K562	blood
27	chr10:118680000-118706800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:118680400-118698400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:118680400-118698800	Weak transcription	NHEK	skin
30	chr10:118680800-118698200	Weak transcription	Ovary	ovary
31	chr10:118680800-118703200	Weak transcription	HMEC	breast
32	chr10:118681000-118698000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:118681000-118698600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:118681000-118698800	Weak transcription	Hela-S3	cervix
35	chr10:118685800-118692800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:118686800-118698200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr10:118687200-118698000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:118687200-118706600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:118687600-118697600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:118688000-118696200	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:118688200-118696000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:118688400-118702600	Weak transcription	HUVEC	blood vessel
43	chr10:118689800-118702800	Weak transcription	HepG2	liver
44	chr10:118690200-118699400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:118690200-118706400	Weak transcription	HSMM	muscle
46	chr10:118690400-118697800	Weak transcription	Fetal Intestine Large	intestine
47	chr10:118691200-118691800	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr10:118691400-118691800	ZNF genes & repeats	Brain Angular Gyrus	brain
49	chr10:118691400-118692000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:118691400-118692000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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