Variant report

Variant	rs9664187
Chromosome Location	chr10:118698698-118698699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10749230	1.00[EUR][1000 genomes]
rs10787731	1.00[EUR][1000 genomes]
rs11812450	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814798	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819524	1.00[EUR][1000 genomes]
rs17095392	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095395	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095418	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095442	1.00[EUR][1000 genomes]
rs17095444	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095457	1.00[EUR][1000 genomes]
rs17095461	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095484	1.00[EUR][1000 genomes]
rs17095519	1.00[EUR][1000 genomes]
rs17095827	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1898345	1.00[EUR][1000 genomes]
rs1905540	1.00[EUR][1000 genomes]
rs1905547	1.00[EUR][1000 genomes]
rs2164656	1.00[EUR][1000 genomes]
rs2901108	1.00[EUR][1000 genomes]
rs4354623	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4360618	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4752023	1.00[EUR][1000 genomes]
rs56000111	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56004012	1.00[EUR][1000 genomes]
rs56916100	1.00[EUR][1000 genomes]
rs58179258	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58852191	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58947347	1.00[EUR][1000 genomes]
rs59036131	1.00[EUR][1000 genomes]
rs60004142	1.00[EUR][1000 genomes]
rs60162197	1.00[EUR][1000 genomes]
rs60882013	1.00[EUR][1000 genomes]
rs61652738	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6585423	1.00[EUR][1000 genomes]
rs7074928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7076347	1.00[EUR][1000 genomes]
rs7090958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101129	1.00[EUR][1000 genomes]
rs7101193	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159004	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159005	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159007	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74159008	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159009	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159010	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159014	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159015	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159016	1.00[EUR][1000 genomes]
rs74159017	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159018	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159020	1.00[EUR][1000 genomes]
rs74159021	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161333	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161334	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74161335	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7895011	1.00[EUR][1000 genomes]
rs7903949	1.00[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:118667200-118698800	Weak transcription	Placenta	Placenta
7	chr10:118667400-118703200	Weak transcription	Aorta	Aorta
8	chr10:118671000-118702800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:118673000-118706400	Weak transcription	NH-A	brain
10	chr10:118673800-118706400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:118675000-118706600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:118678000-118706600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:118680000-118699000	Weak transcription	K562	blood
14	chr10:118680000-118706800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:118680400-118698800	Weak transcription	NHEK	skin
16	chr10:118680800-118703200	Weak transcription	HMEC	breast
17	chr10:118681000-118698800	Weak transcription	Hela-S3	cervix
18	chr10:118687200-118706600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:118688400-118702600	Weak transcription	HUVEC	blood vessel
20	chr10:118689800-118702800	Weak transcription	HepG2	liver
21	chr10:118690200-118699400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:118690200-118706400	Weak transcription	HSMM	muscle
23	chr10:118692000-118698800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:118692600-118698800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:118692600-118699000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:118694800-118706600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:118695800-118706400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:118696200-118703000	Weak transcription	Fetal Brain Male	brain
29	chr10:118696400-118700400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:118696800-118700200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:118697000-118699200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:118697200-118706600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:118697400-118700200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:118697600-118699800	Strong transcription	Brain Germinal Matrix	brain
35	chr10:118697600-118700000	Strong transcription	Liver	Liver
36	chr10:118697600-118700000	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr10:118697600-118702800	Strong transcription	Brain Hippocampus Middle	brain
38	chr10:118697600-118705600	Strong transcription	A549	lung
39	chr10:118697600-118707000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:118697800-118699200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:118697800-118699200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:118697800-118699200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
43	chr10:118697800-118699200	Strong transcription	Fetal Intestine Small	intestine
44	chr10:118697800-118699200	Strong transcription	Fetal Stomach	stomach
45	chr10:118697800-118699200	Strong transcription	Pancreas	Pancrea
46	chr10:118697800-118699800	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:118697800-118699800	Strong transcription	Fetal Intestine Large	intestine
48	chr10:118697800-118705400	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr10:118697800-118706600	Weak transcription	HSMMtube	muscle
50	chr10:118698000-118699600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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