Variant report

Variant	rs74159020
Chromosome Location	chr10:118762972-118762973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118745589..118747161-chr10:118762227..118764656,2	K562	blood:
2	chr10:118754623..118756244-chr10:118762532..118764217,2	MCF-7	breast:
3	chr10:118607533..118609886-chr10:118761631..118763740,2	MCF-7	breast:
4	chr10:118706892..118708756-chr10:118762371..118764787,2	MCF-7	breast:
5	chr10:118714040..118715856-chr10:118762627..118764628,2	MCF-7	breast:
6	chr10:118762279..118764768-chr10:118773553..118775588,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188316	Chromatin interaction
ENSG00000225302	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10749230	1.00[EUR][1000 genomes]
rs10787731	1.00[EUR][1000 genomes]
rs11812450	1.00[EUR][1000 genomes]
rs11814798	1.00[EUR][1000 genomes]
rs11819524	1.00[EUR][1000 genomes]
rs17095392	1.00[EUR][1000 genomes]
rs17095395	1.00[EUR][1000 genomes]
rs17095404	1.00[EUR][1000 genomes]
rs17095418	1.00[EUR][1000 genomes]
rs17095442	1.00[EUR][1000 genomes]
rs17095444	1.00[EUR][1000 genomes]
rs17095447	1.00[EUR][1000 genomes]
rs17095457	1.00[EUR][1000 genomes]
rs17095461	1.00[EUR][1000 genomes]
rs17095484	1.00[EUR][1000 genomes]
rs17095519	1.00[EUR][1000 genomes]
rs17095827	1.00[EUR][1000 genomes]
rs1898345	1.00[EUR][1000 genomes]
rs1905540	1.00[EUR][1000 genomes]
rs1905547	1.00[EUR][1000 genomes]
rs2164656	1.00[EUR][1000 genomes]
rs2901108	1.00[EUR][1000 genomes]
rs4354623	1.00[EUR][1000 genomes]
rs4360618	1.00[EUR][1000 genomes]
rs4752023	1.00[EUR][1000 genomes]
rs56000111	1.00[EUR][1000 genomes]
rs56004012	1.00[EUR][1000 genomes]
rs56916100	1.00[EUR][1000 genomes]
rs58852191	1.00[EUR][1000 genomes]
rs58947347	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59036131	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60004142	1.00[EUR][1000 genomes]
rs60162197	1.00[EUR][1000 genomes]
rs60882013	1.00[EUR][1000 genomes]
rs61652738	1.00[EUR][1000 genomes]
rs6585423	1.00[EUR][1000 genomes]
rs7074928	1.00[EUR][1000 genomes]
rs7076347	1.00[EUR][1000 genomes]
rs7090958	1.00[EUR][1000 genomes]
rs7101129	1.00[EUR][1000 genomes]
rs7101193	1.00[EUR][1000 genomes]
rs74159004	1.00[EUR][1000 genomes]
rs74159005	1.00[EUR][1000 genomes]
rs74159007	1.00[EUR][1000 genomes]
rs74159008	1.00[EUR][1000 genomes]
rs74159009	1.00[EUR][1000 genomes]
rs74159010	1.00[EUR][1000 genomes]
rs74159014	1.00[EUR][1000 genomes]
rs74159015	1.00[EUR][1000 genomes]
rs74159016	1.00[EUR][1000 genomes]
rs74159017	1.00[EUR][1000 genomes]
rs74159018	1.00[EUR][1000 genomes]
rs74159021	1.00[EUR][1000 genomes]
rs74161333	1.00[EUR][1000 genomes]
rs74161334	1.00[EUR][1000 genomes]
rs74161335	1.00[EUR][1000 genomes]
rs7895011	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7903949	1.00[EUR][1000 genomes]
rs9664187	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118721600-118764000	Weak transcription	Ovary	ovary
2	chr10:118725200-118763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:118747400-118763000	Weak transcription	HUVEC	blood vessel
4	chr10:118750200-118764000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:118751600-118763800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:118752400-118763600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:118752400-118764000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:118755600-118763800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:118756800-118763200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:118756800-118763600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:118757200-118763600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:118759000-118763600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:118760000-118763600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:118760000-118763800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:118760200-118763600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:118760400-118765200	Active TSS	Brain Cingulate Gyrus	brain
17	chr10:118760800-118763800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:118760800-118765200	Active TSS	Brain Anterior Caudate	brain
19	chr10:118761000-118765200	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr10:118761000-118765200	Active TSS	Brain Substantia Nigra	brain
21	chr10:118761400-118765600	Active TSS	Brain Angular Gyrus	brain
22	chr10:118761600-118763800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:118762000-118763000	Active TSS	Brain Germinal Matrix	brain
24	chr10:118762000-118765200	Active TSS	Brain Hippocampus Middle	brain
25	chr10:118762600-118763600	Active TSS	Fetal Brain Female	brain
26	chr10:118762800-118763000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:118762800-118763000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr10:118762800-118763200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr10:118762800-118763200	Flanking Active TSS	Fetal Brain Male	brain
30	chr10:118762800-118763200	Enhancers	Small Intestine	intestine
31	chr10:118762800-118763200	Flanking Active TSS	Hela-S3	cervix
32	chr10:118762800-118763200	Flanking Active TSS	K562	blood
33	chr10:118762800-118763400	Flanking Active TSS	A549	lung
34	chr10:118762800-118763400	Flanking Active TSS	HepG2	liver
35	chr10:118762800-118763600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:118762800-118763600	Enhancers	Pancreas	Pancrea
37	chr10:118762800-118763600	Enhancers	NHEK	skin
38	chr10:118762800-118763800	Enhancers	Fetal Intestine Large	intestine
39	chr10:118762800-118763800	Enhancers	Fetal Intestine Small	intestine
40	chr10:118762800-118763800	Enhancers	Placenta	Placenta
41	chr10:118762800-118764000	Flanking Active TSS	Liver	Liver
42	chr10:118762800-118765200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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