Variant report

Variant	rs60882013
Chromosome Location	chr10:118768407-118768408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118764547..118766196-chr10:118768228..118770717,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10749230	1.00[EUR][1000 genomes]
rs10787731	1.00[EUR][1000 genomes]
rs11812450	1.00[EUR][1000 genomes]
rs11814798	1.00[EUR][1000 genomes]
rs11819524	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095392	1.00[EUR][1000 genomes]
rs17095395	1.00[EUR][1000 genomes]
rs17095404	1.00[EUR][1000 genomes]
rs17095418	1.00[EUR][1000 genomes]
rs17095442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095444	1.00[EUR][1000 genomes]
rs17095447	1.00[EUR][1000 genomes]
rs17095457	1.00[EUR][1000 genomes]
rs17095461	1.00[EUR][1000 genomes]
rs17095484	1.00[EUR][1000 genomes]
rs17095519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095827	1.00[EUR][1000 genomes]
rs1898345	1.00[EUR][1000 genomes]
rs1905540	1.00[EUR][1000 genomes]
rs1905547	1.00[EUR][1000 genomes]
rs2164656	1.00[EUR][1000 genomes]
rs2901108	1.00[EUR][1000 genomes]
rs4354623	1.00[EUR][1000 genomes]
rs4360618	1.00[EUR][1000 genomes]
rs4752023	1.00[EUR][1000 genomes]
rs56000111	1.00[EUR][1000 genomes]
rs56004012	1.00[EUR][1000 genomes]
rs56916100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58852191	1.00[EUR][1000 genomes]
rs58947347	1.00[EUR][1000 genomes]
rs59036131	1.00[EUR][1000 genomes]
rs60004142	1.00[EUR][1000 genomes]
rs60162197	1.00[EUR][1000 genomes]
rs61652738	1.00[EUR][1000 genomes]
rs6585423	1.00[EUR][1000 genomes]
rs7074928	1.00[EUR][1000 genomes]
rs7076347	1.00[EUR][1000 genomes]
rs7090958	1.00[EUR][1000 genomes]
rs7101129	1.00[EUR][1000 genomes]
rs7101193	1.00[EUR][1000 genomes]
rs74159004	1.00[EUR][1000 genomes]
rs74159005	1.00[EUR][1000 genomes]
rs74159007	1.00[EUR][1000 genomes]
rs74159008	1.00[EUR][1000 genomes]
rs74159009	1.00[EUR][1000 genomes]
rs74159010	1.00[EUR][1000 genomes]
rs74159014	1.00[EUR][1000 genomes]
rs74159015	1.00[EUR][1000 genomes]
rs74159016	1.00[EUR][1000 genomes]
rs74159017	1.00[EUR][1000 genomes]
rs74159018	1.00[EUR][1000 genomes]
rs74159020	1.00[EUR][1000 genomes]
rs74159021	1.00[EUR][1000 genomes]
rs74161333	1.00[EUR][1000 genomes]
rs74161334	1.00[EUR][1000 genomes]
rs74161335	1.00[EUR][1000 genomes]
rs7895011	1.00[EUR][1000 genomes]
rs7903949	1.00[EUR][1000 genomes]
rs9664187	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv3525989	chr10:118764562-118770560	Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a
3	esv3525990	chr10:118765187-118770410	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
4	esv3525991	chr10:118765187-118770410	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
5	esv11358	chr10:118766138-118768926	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv552213	chr10:118767603-118768894	Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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