Variant report

Variant	rs74159038
Chromosome Location	chr10:118861203-118861204
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17095413	1.00[AMR][1000 genomes]
rs17095457	1.00[AMR][1000 genomes]
rs17095484	1.00[AMR][1000 genomes]
rs55941369	1.00[AMR][1000 genomes]
rs59308596	1.00[AMR][1000 genomes]
rs60004142	1.00[AMR][1000 genomes]
rs60162197	1.00[AMR][1000 genomes]
rs73387894	1.00[AMR][1000 genomes]
rs74159006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159016	1.00[AMR][1000 genomes]
rs74159019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118861000-118861400	Enhancers	Brain Anterior Caudate	brain
2	chr10:118861000-118862000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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