Variant report

Variant	rs74159040
Chromosome Location	chr10:118891716-118891717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118889635..118891838-chr10:118894016..118895689,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17095413	1.00[AMR][1000 genomes]
rs17095457	1.00[AMR][1000 genomes]
rs17095484	1.00[AMR][1000 genomes]
rs55941369	1.00[AMR][1000 genomes]
rs59308596	1.00[AMR][1000 genomes]
rs60004142	1.00[AMR][1000 genomes]
rs60162197	1.00[AMR][1000 genomes]
rs73387894	1.00[AMR][1000 genomes]
rs74159006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159016	1.00[AMR][1000 genomes]
rs74159019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74159159	1.00[AMR][1000 genomes]
rs74159180	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv825577	chr10:118887637-118905958	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118890000-118894200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
2	chr10:118890400-118892600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:118890400-118899000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr10:118890600-118892000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:118890600-118892400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr10:118890600-118892400	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:118890600-118892600	Bivalent Enhancer	Left Ventricle	heart
8	chr10:118890600-118892800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:118890600-118894600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr10:118890600-118894800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
11	chr10:118890800-118891800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
12	chr10:118890800-118891800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:118890800-118891800	Bivalent/Poised TSS	Right Ventricle	heart
14	chr10:118890800-118891800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
15	chr10:118890800-118892600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:118890800-118892600	Enhancers	Gastric	stomach
17	chr10:118890800-118892600	Bivalent Enhancer	Spleen	Spleen
18	chr10:118890800-118893400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr10:118890800-118893600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
20	chr10:118890800-118893600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
21	chr10:118890800-118894600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
22	chr10:118890800-118894600	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr10:118890800-118894600	Bivalent Enhancer	Fetal Stomach	stomach
24	chr10:118891000-118891800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr10:118891000-118891800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
26	chr10:118891000-118892200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:118891000-118892200	Active TSS	Brain Anterior Caudate	brain
28	chr10:118891000-118892400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:118891000-118892400	Bivalent Enhancer	Fetal Lung	lung
30	chr10:118891000-118892600	Enhancers	Pancreas	Pancrea
31	chr10:118891000-118894400	Bivalent/Poised TSS	NHEK	skin
32	chr10:118891200-118891800	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:118891200-118891800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
34	chr10:118891200-118891800	Bivalent Enhancer	Liver	Liver
35	chr10:118891200-118892000	Bivalent Enhancer	HMEC	breast
36	chr10:118891200-118892200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
37	chr10:118891200-118892200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:118891200-118892400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
39	chr10:118891200-118892400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
40	chr10:118891200-118892400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:118891200-118893600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:118891400-118891800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:118891400-118891800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
44	chr10:118891400-118892000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:118891400-118892400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
46	chr10:118891400-118892400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
47	chr10:118891400-118892600	Bivalent Enhancer	Fetal Intestine Large	intestine
48	chr10:118891400-118892800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
49	chr10:118891400-118893000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
50	chr10:118891400-118893600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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