Variant report

Variant	rs73385839
Chromosome Location	chr6:28280590-28280591
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28278749..28286420-chr6:28298924..28309589,20	K562	blood:
2	chr6:28263544..28266110-chr6:28280477..28282083,2	K562	blood:
3	chr6:28278690..28281090-chr6:28292415..28293983,2	K562	blood:
4	chr6:28280348..28282380-chr6:28284969..28286632,2	K562	blood:
5	chr6:28278744..28280710-chr6:28315124..28318113,2	K562	blood:
6	chr6:28280497..28286248-chr6:28302122..28306954,10	K562	blood:
7	chr6:28279292..28281090-chr6:28292483..28294550,2	K562	blood:
8	chr6:28252016..28254141-chr6:28279359..28281399,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction
ENSG00000189298	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2223287	1.00[AMR][1000 genomes]
rs57935190	1.00[AMR][1000 genomes]
rs60411265	1.00[AMR][1000 genomes]
rs6903306	0.94[AFR][1000 genomes]
rs73385824	1.00[AMR][1000 genomes]
rs73385893	0.94[AFR][1000 genomes]
rs73398549	1.00[AMR][1000 genomes]
rs73399652	0.94[AFR][1000 genomes]
rs73400511	1.00[AMR][1000 genomes]
rs73400554	1.00[AMR][1000 genomes]
rs73400574	1.00[AMR][1000 genomes]
rs73402526	1.00[AMR][1000 genomes]
rs73402529	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402530	1.00[AMR][1000 genomes]
rs73402536	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7767244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28250000-28293800	Weak transcription	Gastric	stomach
2	chr6:28250600-28280600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:28255200-28283000	Weak transcription	HSMMtube	muscle
4	chr6:28255200-28293800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:28256600-28280800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:28265000-28280600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:28268400-28280600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:28268800-28293400	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:28269200-28291600	Weak transcription	Right Ventricle	heart
10	chr6:28269400-28280800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:28270000-28280800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:28270000-28290400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:28270000-28291400	Weak transcription	Ovary	ovary
14	chr6:28270000-28291600	Weak transcription	Brain Anterior Caudate	brain
15	chr6:28270000-28291600	Weak transcription	Fetal Brain Female	brain
16	chr6:28270000-28293400	Weak transcription	Brain Angular Gyrus	brain
17	chr6:28271200-28293800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:28271400-28293400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:28272400-28291800	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:28272400-28293200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:28272600-28292000	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:28272600-28292600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:28272600-28292600	Weak transcription	Brain Germinal Matrix	brain
24	chr6:28273000-28291600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:28279200-28280600	Weak transcription	Esophagus	oesophagus
26	chr6:28279400-28280600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:28279400-28280600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:28279400-28280800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:28279400-28280800	Weak transcription	Pancreas	Pancrea
30	chr6:28279400-28285400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:28279400-28290600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:28279400-28293800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:28279600-28280600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:28279600-28282200	Strong transcription	Stomach Smooth Muscle	stomach
35	chr6:28279600-28282600	Weak transcription	K562	blood
36	chr6:28279800-28281200	ZNF genes & repeats	Fetal Stomach	stomach
37	chr6:28279800-28288200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:28280000-28281200	Strong transcription	Left Ventricle	heart

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