Variant report

Variant	rs73402536
Chromosome Location	chr6:28240370-28240371
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28239901..28245005-chr6:28300469..28305210,5	K562	blood:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2223287	1.00[AMR][1000 genomes]
rs57935190	1.00[AMR][1000 genomes]
rs60411265	1.00[AMR][1000 genomes]
rs6903306	0.83[AFR][1000 genomes]
rs73385824	1.00[AMR][1000 genomes]
rs73385839	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73385893	0.83[AFR][1000 genomes]
rs73394789	1.00[AMR][1000 genomes]
rs73396511	1.00[AMR][1000 genomes]
rs73398549	1.00[AMR][1000 genomes]
rs73399652	0.83[AFR][1000 genomes]
rs73400511	1.00[AMR][1000 genomes]
rs73400554	1.00[AMR][1000 genomes]
rs73400574	1.00[AMR][1000 genomes]
rs73402526	1.00[AMR][1000 genomes]
rs73402529	1.00[AMR][1000 genomes]
rs73402530	1.00[AMR][1000 genomes]
rs7767244	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28235400-28249000	Weak transcription	Small Intestine	intestine
2	chr6:28235600-28243400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:28235600-28249000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:28235600-28249000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:28236200-28241800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:28236200-28247400	Weak transcription	Stomach Mucosa	stomach
7	chr6:28236200-28248000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:28236200-28249400	Weak transcription	Fetal Heart	heart
9	chr6:28236400-28240400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:28236400-28240400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:28236400-28240400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:28236400-28242000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:28236800-28240600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:28237400-28241600	Weak transcription	GM12878-XiMat	blood
15	chr6:28237400-28245800	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:28237400-28249000	Weak transcription	Psoas Muscle	Psoas
17	chr6:28237600-28248800	Weak transcription	A549	lung
18	chr6:28238000-28245600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:28238000-28248800	Weak transcription	Hela-S3	cervix
20	chr6:28238200-28245200	Strong transcription	Fetal Intestine Large	intestine
21	chr6:28238800-28244000	Strong transcription	Ovary	ovary
22	chr6:28238800-28245400	Strong transcription	Fetal Stomach	stomach
23	chr6:28238800-28245600	Strong transcription	Primary T cells from cord blood	blood
24	chr6:28238800-28245800	Strong transcription	Fetal Muscle Trunk	muscle
25	chr6:28238800-28245800	Strong transcription	Stomach Smooth Muscle	stomach
26	chr6:28238800-28246000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:28239200-28240600	Strong transcription	H9 Cell Line	embryonic stem cell
28	chr6:28239200-28241200	Strong transcription	Right Ventricle	heart
29	chr6:28239200-28242000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:28239200-28242400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:28239200-28242600	Strong transcription	Fetal Intestine Small	intestine
32	chr6:28239200-28243800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:28239200-28244800	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr6:28239200-28245000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:28239200-28245000	Strong transcription	Spleen	Spleen
36	chr6:28239200-28245200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr6:28239200-28245200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:28239200-28245200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:28239200-28245200	Strong transcription	Lung	lung
40	chr6:28239200-28245400	Strong transcription	Brain Anterior Caudate	brain
41	chr6:28239200-28245400	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:28239200-28245600	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:28239200-28245600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr6:28239200-28246000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:28239200-28246000	Strong transcription	Colon Smooth Muscle	Colon
46	chr6:28239400-28245000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:28239400-28245400	Strong transcription	Primary hematopoietic stem cells	blood
48	chr6:28239400-28246000	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:28239600-28240400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:28239600-28240600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

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