Variant report

Variant	rs73394556
Chromosome Location	chr6:24756300-24756301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr6:24756290-24757007	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:24728324..24730714-chr6:24754994..24758482,3	K562	blood:
2	chr6:24754328..24757631-chr6:24775519..24778646,3	K562	blood:
3	chr6:24719521..24723153-chr6:24754437..24759094,5	MCF-7	breast:
4	chr6:22024469..22025971-chr6:24753748..24756613,2	K562	blood:
5	chr6:24718552..24723033-chr6:24754050..24760270,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000218806	TF binding region
ENSG00000112312	Chromatin interaction
ENSG00000112308	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1002649	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12183400	1.00[EUR][1000 genomes]
rs16889670	1.00[EUR][1000 genomes]
rs56208026	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59427770	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59587218	0.81[AMR][1000 genomes]
rs6901466	1.00[EUR][1000 genomes]
rs6917565	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934938	1.00[EUR][1000 genomes]
rs6935339	1.00[EUR][1000 genomes]
rs73394558	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394570	1.00[EUR][1000 genomes]
rs73394575	1.00[EUR][1000 genomes]
rs73394577	1.00[EUR][1000 genomes]
rs73394578	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394591	1.00[EUR][1000 genomes]
rs73396453	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73728683	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757501	1.00[EUR][1000 genomes]
rs7771462	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9461060	1.00[EUR][1000 genomes]
rs9461061	1.00[EUR][1000 genomes]
rs9461062	1.00[EUR][1000 genomes]
rs9461063	1.00[EUR][1000 genomes]
rs9461064	1.00[EUR][1000 genomes]
rs9461065	1.00[EUR][1000 genomes]
rs9467284	1.00[EUR][1000 genomes]
rs9467285	1.00[EUR][1000 genomes]
rs9467288	1.00[EUR][1000 genomes]
rs9467289	1.00[EUR][1000 genomes]
rs9467290	1.00[EUR][1000 genomes]
rs9467291	1.00[EUR][1000 genomes]
rs9467292	1.00[EUR][1000 genomes]
rs9467293	1.00[EUR][1000 genomes]
rs9467295	1.00[EUR][1000 genomes]
rs9467296	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv965630	chr6:24745410-24767271	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24754000-24761400	Weak transcription	Stomach Mucosa	stomach
2	chr6:24755400-24757000	Enhancers	K562	blood
3	chr6:24756000-24761800	Weak transcription	Hela-S3	cervix

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