The 2.0 version of rSNPBase

Variant report

Variant rs59427770
Chromosome Location chr6:24793258-24793259
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:24776400-24803200 Weak transcription HSMMtube muscle
2 chr6:24776400-24807400 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr6:24776800-24807600 Weak transcription Placenta Amnion Placenta Amnion
4 chr6:24777000-24797000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr6:24777000-24801200 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr6:24777000-24802400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr6:24777000-24805000 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr6:24777000-24806200 Weak transcription Spleen Spleen
9 chr6:24777000-24808000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr6:24777000-24809400 Weak transcription Brain Germinal Matrix brain
11 chr6:24777000-24811600 Weak transcription Brain Hippocampus Middle brain
12 chr6:24777000-24847600 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr6:24777000-24859600 Weak transcription Psoas Muscle Psoas
14 chr6:24777200-24802400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr6:24777200-24802400 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr6:24777600-24802400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr6:24781000-24802400 Weak transcription Muscle Satellite Cultured Cells --
18 chr6:24782200-24797800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr6:24782400-24795200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr6:24782400-24803000 Weak transcription Pancreas Pancrea
21 chr6:24783400-24802000 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr6:24783600-24802400 Weak transcription Primary T helper cells PMA-I stimulated --
23 chr6:24785000-24801200 Weak transcription Primary B cells from peripheral blood blood
24 chr6:24785000-24802000 Weak transcription Primary T cells fromperipheralblood blood
25 chr6:24786400-24798000 Weak transcription Brain Anterior Caudate brain
26 chr6:24786400-24799800 Weak transcription Osteobl bone
27 chr6:24786600-24799600 Weak transcription Hela-S3 cervix
28 chr6:24787600-24797000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr6:24787600-24798600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr6:24787600-24799000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr6:24787600-24801400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
32 chr6:24787600-24806200 Weak transcription Fetal Stomach stomach
33 chr6:24787800-24797000 Weak transcription H9 Cell Line embryonic stem cell
34 chr6:24787800-24797200 Weak transcription Ovary ovary
35 chr6:24787800-24797600 Weak transcription iPS-15b Cell Line embryonic stem cell
36 chr6:24787800-24798800 Weak transcription HepG2 liver
37 chr6:24787800-24802000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr6:24787800-24802600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr6:24787800-24802600 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr6:24788000-24805600 Weak transcription Fetal Muscle Leg muscle
41 chr6:24788000-24810200 Weak transcription Left Ventricle heart
42 chr6:24788000-24832000 Weak transcription Brain Substantia Nigra brain
43 chr6:24788200-24799600 Weak transcription Liver Liver
44 chr6:24788200-24802400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr6:24788400-24796800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr6:24788400-24797600 Weak transcription NHEK skin
47 chr6:24788600-24797000 Weak transcription HMEC breast
48 chr6:24788600-24797800 Weak transcription ES-I3 Cell Line embryonic stem cell
49 chr6:24788600-24800800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr6:24788800-24797800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015