Variant report

Variant	rs6917565
Chromosome Location	chr6:24766746-24766747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:24719491..24722153-chr6:24764728..24767268,4	K562	blood:
2	chr6:24701438..24703721-chr6:24765160..24767059,2	K562	blood:
3	chr6:24763655..24765445-chr6:24765562..24767121,2	MCF-7	breast:
4	chr6:24759850..24762129-chr6:24765744..24768567,2	K562	blood:
5	chr6:24723437..24726062-chr6:24765366..24768785,3	K562	blood:
6	chr6:24719463..24723436-chr6:24763609..24766960,8	MCF-7	breast:
7	chr6:24717538..24721852-chr6:24764509..24768220,6	MCF-7	breast:
8	chr6:24765911..24769341-chr6:24775043..24776588,3	K562	blood:
9	chr6:24765911..24769341-chr6:24773986..24776544,3	K562	blood:
10	chr6:24524806..24525345-chr6:24766554..24767181,2	K562	blood:
11	chr6:24718269..24722853-chr6:24759915..24768745,12	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112308	Chromatin interaction
ENSG00000272345	Chromatin interaction
ENSG00000112312	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1002649	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10946726	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11968288	1.00[ASN][1000 genomes]
rs12183400	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889670	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889688	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2295735	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2307306	1.00[CHD][hapmap];0.83[GIH][hapmap];0.81[LWK][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs2307307	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28561768	1.00[ASN][1000 genomes]
rs3756809	1.00[ASN][1000 genomes]
rs3756810	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3756811	1.00[ASN][1000 genomes]
rs3756812	1.00[ASN][1000 genomes]
rs3813682	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[ASN][1000 genomes]
rs56208026	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58334728	1.00[ASN][1000 genomes]
rs58898420	1.00[ASN][1000 genomes]
rs59427770	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59587218	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59904886	1.00[ASN][1000 genomes]
rs60794509	0.95[ASN][1000 genomes]
rs6456634	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6456635	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6901466	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912564	1.00[ASN][1000 genomes]
rs6916816	1.00[ASN][1000 genomes]
rs6917813	1.00[ASN][1000 genomes]
rs6934938	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935339	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939757	1.00[ASN][1000 genomes]
rs6940028	1.00[ASN][1000 genomes]
rs73394556	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394558	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73394570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394572	1.00[ASN][1000 genomes]
rs73394575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394578	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396404	1.00[ASN][1000 genomes]
rs73396407	1.00[ASN][1000 genomes]
rs73396430	1.00[ASN][1000 genomes]
rs73396439	1.00[ASN][1000 genomes]
rs73396453	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7356832	1.00[ASN][1000 genomes]
rs7357034	1.00[ASN][1000 genomes]
rs73728683	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7757501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771372	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7771462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7775042	1.00[ASN][1000 genomes]
rs9295632	1.00[ASN][1000 genomes]
rs9295634	1.00[ASN][1000 genomes]
rs9461060	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.82[MKK][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461061	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461064	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461065	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461067	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9461068	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs9461069	1.00[ASN][1000 genomes]
rs9461071	1.00[ASN][1000 genomes]
rs9467284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467286	1.00[ASN][1000 genomes]
rs9467288	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467289	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467290	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467291	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467292	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467294	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9467295	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467297	1.00[ASN][1000 genomes]
rs9467303	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9467304	1.00[ASN][1000 genomes]
rs9467305	1.00[ASN][1000 genomes]
rs9467309	1.00[ASN][1000 genomes]
rs9467311	1.00[ASN][1000 genomes]
rs9467312	1.00[ASN][1000 genomes]
rs9467316	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9467317	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9467318	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9467319	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv965630	chr6:24745410-24767271	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24760400-24775000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24762200-24767200	Weak transcription	Hela-S3	cervix
3	chr6:24764200-24771400	Weak transcription	K562	blood
4	chr6:24765000-24766800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:24765200-24766800	Weak transcription	Fetal Heart	heart
6	chr6:24765400-24774400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:24765800-24766800	Weak transcription	Stomach Mucosa	stomach
8	chr6:24765800-24770600	Weak transcription	HepG2	liver

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